Alignments for a candidate for trpD_2 in Pseudomonas fluorescens FW300-N1B4

Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (characterized)
to candidate Pf1N1B4_2548 Anthranilate phosphoribosyltransferase (EC 2.4.2.18)

Query= SwissProt::Q8PD71
         (345 letters)



>FitnessBrowser__pseudo1_N1B4:Pf1N1B4_2548
          Length = 349

 Score =  294 bits (753), Expect = 2e-84
 Identities = 160/335 (47%), Positives = 211/335 (62%), Gaps = 4/335 (1%)

Query: 8   ALQRTIEHREIFHDEMVDLMRQIMRGEVSDAMVSAILTGLRVKKETIGEIAGAATVMREF 67
           AL R + H ++  DEM D+MR+IM G+ +DA + A +  +R+K E+I EI GA T MRE 
Sbjct: 6   ALSRIVGHLDLTTDEMRDVMREIMTGQCTDAQIGAFMMAMRMKSESIDEIVGAVTAMREL 65

Query: 68  SRRVEVTDRRHMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSADA 127
           + +VE+     +VD+VGTGGDG++ FN+ST + FV AA G  VAKHGNR+VS KSGSAD 
Sbjct: 66  ADKVELNTLDGVVDVVGTGGDGANIFNVSTASSFVVAAAGCTVAKHGNRAVSGKSGSADL 125

Query: 128 LEALGAVIELQPEQVAASLAQTGIGFMYAPVHHPAMKVVAPVRREMGVRTIFNILGPLTN 187
           LEA G  + L P QVA  +   GIGFM+A  HH AMK  A  RRE+G+RT+FN+LGPLTN
Sbjct: 126 LEAAGIYLNLTPVQVARCIDNVGIGFMFAQTHHSAMKHAAGPRRELGLRTLFNMLGPLTN 185

Query: 188 PAGSPNILMGVFHPDLVGIQARVLQELGAERALVVWGRDGMDELSLGAGTLVGELRDGQV 247
           PAG  + ++GVF   L    A VLQ LG++  LVV  +DG+DE SL A T V EL++ Q+
Sbjct: 186 PAGVKHQVVGVFSQALCRPLAEVLQRLGSKHVLVVHSKDGLDEFSLAAPTFVAELKNDQI 245

Query: 248 HEYEVHPEDFGIAMSASRNLKVADAAESRAMLLQVLDNVP----GPALDIVALNAGAALY 303
            E+ V PED G+   +   L V   A S  ++   L          A +++ LNAGAALY
Sbjct: 246 TEFWVEPEDLGMKSQSLHGLAVESPAASLELIRDALGKRKTENGQKAAEMIVLNAGAALY 305

Query: 304 VAGVADSIADGIVRARQVLADGSARACLDAYVAFT 338
            A VA S+ +G+  A   L  G AR  L+   AFT
Sbjct: 306 AADVASSLKEGVALAHDALHTGLAREKLEELGAFT 340


Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 302
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 349
Length adjustment: 29
Effective length of query: 316
Effective length of database: 320
Effective search space:   101120
Effective search space used:   101120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate Pf1N1B4_2548 (Anthranilate phosphoribosyltransferase (EC 2.4.2.18))
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.13303.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13303.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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