Align 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (characterized)
to candidate Pf1N1B4_269 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II (EC 2.5.1.54)
Query= BRENDA::P29976
(525 letters)
>FitnessBrowser__pseudo1_N1B4:Pf1N1B4_269
Length = 448
Score = 564 bits (1453), Expect = e-165
Identities = 268/444 (60%), Positives = 340/444 (76%), Gaps = 1/444 (0%)
Query: 75 WTPESWKLKKALQLPDYPNANELESVLKTIEAFPPIVFAGEARNLEERLADAAVGKAFLL 134
W+P+SW+ Q P YP+A L V +T+ ++PP+VFAGEAR L + A+ G+AFLL
Sbjct: 5 WSPDSWRALPIQQQPQYPDAAHLLHVEQTLASYPPLVFAGEARELRRQFAEVTQGRAFLL 64
Query: 135 QGGDCAESFKEFNATNIRDTFRVLLQMSIVLTFGGQVPVIKVGRMAGQFAKPRSDAFEEK 194
QGGDCAESF EF+A IRDTF+VLLQM+IV+TF PV+KVGRMAGQFAKPRS E
Sbjct: 65 QGGDCAESFAEFSAAKIRDTFKVLLQMAIVMTFAAGCPVVKVGRMAGQFAKPRSANDETI 124
Query: 195 DGVKLPSYKGDNINGDTFDEKSRIPDPNRMIRAYTQSAATLNLLRAFATGGYAAIQRVTQ 254
+GV LP+Y+GD +NG FDEKSR+PDP+R++++Y QS ATLNLLRAFA GG+A + +V +
Sbjct: 125 NGVTLPAYRGDIVNGIGFDEKSRVPDPDRLLQSYHQSTATLNLLRAFAQGGFADLHQVHK 184
Query: 255 WNLDFVEQSEQADRYQELANRVDEALGFMSACGLGTDHPLMTTTDFYTSHECLLLPYEQS 314
WNLDF+ S A++Y LA+R+DE L FM ACG+ + P + T F+T+HE LLL YE++
Sbjct: 185 WNLDFIANSALAEKYSHLADRIDETLAFMRACGMDSS-PQLRETSFFTAHEALLLNYEEA 243
Query: 315 LTRLDSTSGLYYDCSAHMVWCGERTRQLDGAHVEFLRGIANPLGIKVSNKMDPFELVKLV 374
R DS + YYDCSAHM+W G+RTRQLDGAHVEFLRG+ NP+G+KV M+P +L++L+
Sbjct: 244 FVRRDSLTNDYYDCSAHMLWIGDRTRQLDGAHVEFLRGVHNPIGVKVGPSMNPEDLIRLI 303
Query: 375 EILNPNNKPGRITVIVRMGAENMRVKLPHLIRAVRRSGQIVTWVCDPMHGNTIKAPCGLK 434
++LNP+N PGR+ +I RMGA + LP LIRAV+R G+ V W DPMHGNTIKA G K
Sbjct: 304 DVLNPDNDPGRLNLIARMGANKVGDHLPQLIRAVQREGKQVLWSSDPMHGNTIKASSGYK 363
Query: 435 TRAFDSILAEVRAFLDVHEQEGSHAGGIHLEMTGQNVTECIGGSRTVTYDDLSSRYHTHC 494
TR F IL EV+ F VHE EGS+AGGIH+EMTGQNVTECIGG+R +T D LS RYHTHC
Sbjct: 364 TRDFAQILGEVKQFFQVHEAEGSYAGGIHIEMTGQNVTECIGGARPITEDGLSDRYHTHC 423
Query: 495 DPRLNASQSLELAFIVAERLRKRR 518
DPR+NA QSLELAF++AE L++ R
Sbjct: 424 DPRMNADQSLELAFLIAETLKQVR 447
Lambda K H
0.318 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 654
Number of extensions: 16
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 448
Length adjustment: 34
Effective length of query: 491
Effective length of database: 414
Effective search space: 203274
Effective search space used: 203274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)
Align candidate Pf1N1B4_269 (2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II (EC 2.5.1.54))
to HMM TIGR01358 (3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54))
../bin/blast/fastacmd -i /tmp/list.27063.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27063.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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