Align 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (characterized)
to candidate Pf1N1B4_289 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54)
Query= BRENDA::P00888 (356 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_289 Length = 358 Score = 416 bits (1069), Expect = e-121 Identities = 207/350 (59%), Positives = 260/350 (74%), Gaps = 1/350 (0%) Query: 6 LNNVHITDEQVLMTPEQLKAAFPLSLQQEAQIADSRKSISDIIAGRDPRLLVVCGPCSIH 65 +N++++ + L+TP+QLK PLS + R+ I +I+ G D RL VV GPCSIH Sbjct: 6 INDLNVASNETLITPDQLKRDIPLSDAALRTVTKGREVIRNILDGTDHRLFVVIGPCSIH 65 Query: 66 DPETALEYARRFKALAAEVSDSLYLVMRVYFEKPRTTVGWKGLINDPHMDGSFDVEAGLQ 125 D + A EYA R KALAAEVSD+LYLVMRVYFEKPRTTVGWKGLINDP++D SF ++ GL Sbjct: 66 DIKAAHEYAERLKALAAEVSDTLYLVMRVYFEKPRTTVGWKGLINDPYLDDSFKIQDGLH 125 Query: 126 IARKLLLELVNMGLPLATEALDPNSPQYLGDLFSWSAIGARTTESQTHREMASGLSMPVG 185 I R+LLL+L MGLP ATEALDP SPQYL DL SWSAIGARTTESQTHREMASGLS VG Sbjct: 126 IGRQLLLDLAEMGLPTATEALDPISPQYLQDLISWSAIGARTTESQTHREMASGLSSAVG 185 Query: 186 FKNGTDGSLATAINAMRAAAQPHRFVGINQAGQVALLQTQGNPDGHVILRGGKA-PNYSP 244 FKNGTDG L AINA+++ + PHRF+GINQ G V+++ T+GN GHV+LRGG PNY Sbjct: 186 FKNGTDGGLTVAINALQSVSSPHRFLGINQEGGVSIVTTKGNAYGHVVLRGGNGKPNYDS 245 Query: 245 ADVAQCEKEMEQAGLRPSLMVDCSHGNSNKDYRRQPAVAESVVAQIKDGNRSIIGLMIES 304 VA CE+ + +A ++P++MVDCSH NSNKD QP V E+V QI +GN+SIIGLM+ES Sbjct: 246 VSVALCEQALNKAKIKPNIMVDCSHANSNKDPALQPLVMENVANQILEGNQSIIGLMVES 305 Query: 305 NIHEGNQSSEQPRSEMKYGVSVTDACISWEMTDALLREIHQDLNGQLTAR 354 +++ G Q+ + ++++YGVS+TDACI W T+ LR +H L L R Sbjct: 306 HLNWGCQAIPKDLADLQYGVSITDACIDWTATENTLRSMHAKLKDVLPKR 355 Lambda K H 0.316 0.131 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 411 Number of extensions: 10 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 356 Length of database: 358 Length adjustment: 29 Effective length of query: 327 Effective length of database: 329 Effective search space: 107583 Effective search space used: 107583 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate Pf1N1B4_289 (2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54))
to HMM TIGR00034 (3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54))
../bin/blast/fastacmd -i /tmp/list.7176.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7176.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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