Alignments for a candidate for dapA in Pseudomonas fluorescens FW300-N1B4

Align 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) (characterized)
to candidate Pf1N1B4_3332 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)

Query= BRENDA::Q9I4W3
         (292 letters)



>FitnessBrowser__pseudo1_N1B4:Pf1N1B4_3332
          Length = 292

 Score =  493 bits (1269), Expect = e-144
 Identities = 248/291 (85%), Positives = 266/291 (91%)

Query: 1   MIAGSMVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVI 60
           MIAGSMVALVTP DAQGRLDWDSL+KLVDFHLQEGTNAIVAVGTTGESATLDV EHI+VI
Sbjct: 1   MIAGSMVALVTPMDAQGRLDWDSLSKLVDFHLQEGTNAIVAVGTTGESATLDVNEHIEVI 60

Query: 61  RRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFR 120
           RRVV QV GRIPVIAGTGANSTREA+ LT  AK+ GADACLLVTPYYNKPTQEG+YQHF+
Sbjct: 61  RRVVAQVAGRIPVIAGTGANSTREAIELTTNAKNAGADACLLVTPYYNKPTQEGLYQHFK 120

Query: 121 HIAEAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIERVGKD 180
            IAEAV IPQILYNVPGRT+CDM  ETV RLS V NIIGIKEATGDLQRAK+++  V  D
Sbjct: 121 AIAEAVDIPQILYNVPGRTACDMQAETVIRLSTVKNIIGIKEATGDLQRAKDILAGVSSD 180

Query: 181 FLVYSGDDATAVELMLLGGKGNISVTANVAPRAMSDLCAAAMRGDAAAARAINDRLMPLH 240
           FLVYSGDDATAVELMLLGGKGNISVTANVAPRAMS+LCAAAM GDA  ARAI+++LMPL+
Sbjct: 181 FLVYSGDDATAVELMLLGGKGNISVTANVAPRAMSELCAAAMAGDAVKARAIHEKLMPLN 240

Query: 241 KALFIESNPIPVKWALHEMGLIPEGIRLPLTWLSPRCHEPLRQAMRQTGVL 291
           K LFIESNPIPVKWALHEMGL+P+GIRLPLTWLS  CHEPLRQAMRQ+GVL
Sbjct: 241 KTLFIESNPIPVKWALHEMGLMPDGIRLPLTWLSAACHEPLRQAMRQSGVL 291


Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 369
Number of extensions: 6
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 292
Length adjustment: 26
Effective length of query: 266
Effective length of database: 266
Effective search space:    70756
Effective search space used:    70756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate Pf1N1B4_3332 (4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.2809.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2809.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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