Alignments for a candidate for cmutase in Pseudomonas fluorescens FW300-N1B4

Align isochorismate lyase (EC 4.2.99.21) (characterized)
to candidate Pf1N1B4_4123 Isochorismate pyruvate-lyase (EC 4.-.-.-)

Query= BRENDA::Q51507
         (101 letters)



>FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4123
          Length = 106

 Score = 90.5 bits (223), Expect = 5e-24
 Identities = 39/91 (42%), Positives = 60/91 (65%)

Query: 4  PEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFKASEAAIPAPERVAAMLPERAR 63
          P +C G+ DIR  ID +D  +++ LG+R  YV AAS+FK S  ++ APER  AML  R  
Sbjct: 9  PAECEGMEDIRREIDALDHAVIKLLGKRFQYVLAASKFKTSATSVRAPERFKAMLATRRE 68

Query: 64 WAEENGLDAPFVEGLFAQIIHWYIAEQIKYW 94
          WAE  GL    +E +++ +++ +IAE++K+W
Sbjct: 69 WAETEGLSPDAIEKMYSDLVNHFIAEEMKHW 99


Lambda     K      H
   0.322    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 101
Length of database: 106
Length adjustment: 11
Effective length of query: 90
Effective length of database: 95
Effective search space:     8550
Effective search space used:     8550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 40 (20.0 bits)

Align candidate Pf1N1B4_4123 (Isochorismate pyruvate-lyase (EC 4.-.-.-))
to HMM PF01817 (CM_2)

Software error:

../bin/blast/fastacmd -i /tmp/list.14194.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14194.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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