Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate Pf1N1B4_4476 Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Query= reanno::pseudo5_N2C3_1:AO356_22970 (339 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4476 Length = 339 Score = 671 bits (1730), Expect = 0.0 Identities = 324/339 (95%), Positives = 332/339 (97%) Query: 1 MGNESINWDKLGFDYIKTDKRYLSHWRDGAWDAGTLTDDNVLHISEGSTALHYGQQCFEG 60 MGNESINWDKLGFDYIKTDKRYLSHWR+G WD GTLT+DNVLHISEGSTALHYGQQCFEG Sbjct: 1 MGNESINWDKLGFDYIKTDKRYLSHWRNGEWDKGTLTEDNVLHISEGSTALHYGQQCFEG 60 Query: 61 LKAYRCKDGSINLFRPDQNAARMQRSCARLLMPQVETEQFVEACKQVVRANERFIPPYGT 120 LKAYRCKDGSINLFRPDQNAARMQRSCARLLMPQV TEQFVEACK+VVRANERFIPPYGT Sbjct: 61 LKAYRCKDGSINLFRPDQNAARMQRSCARLLMPQVSTEQFVEACKEVVRANERFIPPYGT 120 Query: 121 GGALYLRPFVIGVGDNIGVRTAPEFIFSIFCIPVGAYFKGGLTPHNFLISSFDRAAPQGT 180 GGALYLRPFVIGVGDNIGVRTAPEFIFSIFCIPVGAYFKGGLTPHNFLISS+DRAAPQGT Sbjct: 121 GGALYLRPFVIGVGDNIGVRTAPEFIFSIFCIPVGAYFKGGLTPHNFLISSYDRAAPQGT 180 Query: 181 GAAKVGGNYAASLMPGSQAKKASFADCIYLDPMTHSKIEEVGSANFFGITHDNTFVTPRS 240 GAAKVGGNYAASLMPGSQAKKA FADCIYLDP+TH+KIEEVGSANFFGITHDN FVTP S Sbjct: 181 GAAKVGGNYAASLMPGSQAKKAHFADCIYLDPLTHTKIEEVGSANFFGITHDNKFVTPNS 240 Query: 241 PSVLPGITRLSLIELAKSRLGLEVIEGDVFIDKLSDFKEAGACGTAAVITPIGGISYKDK 300 PSVLPGITRLSLIELAK+RLGLEV+EGDVFIDKLSDFKEAGACGTAAVITPIGGISY DK Sbjct: 241 PSVLPGITRLSLIELAKTRLGLEVVEGDVFIDKLSDFKEAGACGTAAVITPIGGISYNDK 300 Query: 301 LHVFHSETEVGPITQKLYKELTGVQTGDVEAPAGWIVKV 339 LHVFHSETEVGPITQKLYKELTGVQTGDVEAPAGWIVKV Sbjct: 301 LHVFHSETEVGPITQKLYKELTGVQTGDVEAPAGWIVKV 339 Lambda K H 0.320 0.138 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 574 Number of extensions: 14 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 339 Length of database: 339 Length adjustment: 28 Effective length of query: 311 Effective length of database: 311 Effective search space: 96721 Effective search space used: 96721 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate Pf1N1B4_4476 (Branched-chain amino acid aminotransferase (EC 2.6.1.42))
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))
../bin/blast/fastacmd -i /tmp/list.3498.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3498.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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