Alignments for a candidate for argH in Pseudomonas fluorescens FW300-N1B4

Align argininosuccinate lyase (EC 4.3.2.1) (characterized)
to candidate Pf1N1B4_4806 Argininosuccinate lyase (EC 4.3.2.1)

Query= BRENDA::P9WPY7
         (470 letters)



>FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4806
          Length = 475

 Score =  464 bits (1195), Expect = e-135
 Identities = 241/460 (52%), Positives = 321/460 (69%), Gaps = 1/460 (0%)

Query: 1   MSTNEGSLWGGRFAGGPSDALAALSKSTHFDWVLAPYDLTASRAHTMVLFRAGLLTEEQR 60
           MS     LWG RF  GPS+ALAALS+     + L PYDL  S+AH   L RAGLL+E++ 
Sbjct: 1   MSQTTDRLWGARFKSGPSEALAALSRCPERYFRLTPYDLAGSKAHARELQRAGLLSEQET 60

Query: 61  DGLLAGLDSLAQDVADGSFGPLVTDEDVHAALERGLIDRVGPDLGGRLRAGRSRNDQVAA 120
             +L  L+ +  D   GS  P + DEDVH  +ER L +R+G  LGG+LRAGRSRNDQ A 
Sbjct: 61  QTMLDALERIGDDFRAGSIAPTLDDEDVHTFIERLLTERLGA-LGGKLRAGRSRNDQTAN 119

Query: 121 LFRMWLRDAVRRVATGVLDVVGALAEQAAAHPSAIMPGKTHLQSAQPILLAHHLLAHAHP 180
             R++LRD VR +A  VL +  AL +QA  H  +I PG THLQ AQPI+ AHHLLAHA  
Sbjct: 120 DLRLFLRDHVRTLAVEVLALQQALVDQAEQHIESICPGFTHLQQAQPIVFAHHLLAHAQS 179

Query: 181 LLRDLDRIVDFDKRAAVSPYGSGALAGSSLGLDPDAIAADLGFSAAADNSVDATAARDFA 240
           +LRD+ R+VD+D R ++SP G+ A+AGS++   P   A ++G+S   +NS+DA A+RD  
Sbjct: 180 MLRDVQRLVDWDVRTSLSPLGAAAMAGSAIARLPQQSAKEMGYSGVCENSIDAVASRDHV 239

Query: 241 AEAAFVFAMIAVDLSRLAEDIIVWSSTEFGYVTLHDSWSTGSSIMPQKKNPDIAELARGK 300
           AE  F+ +M+ +++SRLAE+  +WSS +F +V L D+++TGSSIMPQKKNPDIAELARGK
Sbjct: 240 AEFLFIASMLGINISRLAEEFCLWSSRQFRWVALDDAYATGSSIMPQKKNPDIAELARGK 299

Query: 301 SGRLIGNLAGLLATLKAQPLAYNRDLQEDKEPVFDSVAQLELLLPAMAGLVASLTFNVQR 360
           +GRLIGNL GLL+TLK+ PL+YNRDL EDK  V DSV  L L+LPAMAG+VA++  NV+ 
Sbjct: 300 AGRLIGNLTGLLSTLKSLPLSYNRDLSEDKNGVLDSVDTLLLVLPAMAGMVATMKVNVEE 359

Query: 361 MAELAPAGYTLATDLAEWLVRQGVPFRSAHEAAGAAVRAAEQRGVGLQELTDDELAAISP 420
           +   AP G+TLAT++A+WL  +GVPF+ AHE  GA V+A E+  + L E +   LA I  
Sbjct: 360 LRRQAPLGFTLATEVADWLAVRGVPFKEAHEITGALVQACEKHEIELWEASPALLAEIDS 419

Query: 421 ELTPQVREVLTIEGSVSARDCRGGTAPGRVAEQLNAIGEA 460
            L P+VR+ LT+E +++AR   GGTAP +V EQ+  +  A
Sbjct: 420 RLKPEVRDSLTLEAAIAARSGWGGTAPQQVREQIGRLKTA 459


Lambda     K      H
   0.318    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 564
Number of extensions: 24
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 475
Length adjustment: 33
Effective length of query: 437
Effective length of database: 442
Effective search space:   193154
Effective search space used:   193154
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate Pf1N1B4_4806 (Argininosuccinate lyase (EC 4.3.2.1))
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.1353.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1353.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.