Alignments for a candidate for argE in Pseudomonas fluorescens FW300-N1B4

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate Pf1N1B4_4930 Acetylornithine deacetylase (EC 3.5.1.16)

Query= BRENDA::Q92Y75
         (374 letters)



>FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4930
          Length = 385

 Score =  240 bits (613), Expect = 4e-68
 Identities = 135/373 (36%), Positives = 206/373 (55%), Gaps = 9/373 (2%)

Query: 5   EILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEARGY 64
           EIL +L+ F +V    N  ++ ++R  L S GI   ++    G ++N+FA+ GPKE  G 
Sbjct: 7   EILKRLMAFDTVSSESNMALIEYVRDLLLSKGIESLIVQDETGKKANLFASTGPKELPGI 66

Query: 65  IISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMPLRRP 124
           ++SGH DVVPAA   WT   F+  V+  R+YGRG+ DMKGF+A  + A+   A   L RP
Sbjct: 67  LLSGHTDVVPAAGQAWTFPAFQATVQDGRIYGRGSCDMKGFIALAIDAMLDAADHSLSRP 126

Query: 125 LHLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTVRGR 184
           L +ALS+DEE GC GV  ++  L     +P   +IGEPT M+ +  HKGK + R   RG 
Sbjct: 127 LQIALSHDEETGCVGVRRLLDVLHLASVRPFLCLIGEPTNMQFVLGHKGKGSYRTYCRGL 186

Query: 185 SGHSSRPDQGLNAIHGVAGVLTQAVAEADRL-VGGPFEHVFEPPYSSLQIGTVKGGQAVN 243
             HSS   + +NAIH     +        +L   G  +  ++ PYS++ +G + GG+A+N
Sbjct: 187 EAHSSLAPRSVNAIHVACDFIAALRQSQQQLQAQGAQDADYDVPYSTVHVGQIVGGKALN 246

Query: 244 IIPDSCEVEFEARAISGVDPAELLAPVRKTAEALTTLGFE------VEWQELSAYPALSL 297
           I+P+ C ++FE R +   +  + L  +R+ AE +     +      +E + ++ YP L  
Sbjct: 247 IVPNLCTLDFEVRNLPADNLDQFLEQMRERAEVIVREAKKLSSVAAIEIETVNVYPGLDT 306

Query: 298 EPDAPLAALLEELTGREALPA-VSYGTEAGLF-QRAGIDAIICGPGDIGRAHKPDEYILI 355
            P       L+     +   A VS+GTE GLF QR  +  ++CGPG I +AHKPDE+I I
Sbjct: 307 HPSVEAVRFLKNFAAPDTGTAKVSFGTEGGLFKQRLDVPVVVCGPGSIEQAHKPDEFIEI 366

Query: 356 DELMACRAMVEAL 368
            ++ A    ++ L
Sbjct: 367 SQMQAGERFLDGL 379


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 331
Number of extensions: 11
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 385
Length adjustment: 30
Effective length of query: 344
Effective length of database: 355
Effective search space:   122120
Effective search space used:   122120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate Pf1N1B4_4930 (Acetylornithine deacetylase (EC 3.5.1.16))
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.19542.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19542.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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