Alignments for a candidate for dapA in Pseudomonas fluorescens FW300-N1B4

Align 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 (characterized)
to candidate Pf1N1B4_5813 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)

Query= SwissProt::Q9X1K9
         (294 letters)



>FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5813
          Length = 291

 Score =  161 bits (408), Expect = 1e-44
 Identities = 100/289 (34%), Positives = 157/289 (54%), Gaps = 11/289 (3%)

Query: 2   FRGVGTAIVTPFKNGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSR 61
           F+G+   IVTPF +G +D     RLV + LE GV+ ++V GTTGE+  + + E+  ++  
Sbjct: 4   FQGIWVPIVTPFHDGAIDFAGLRRLVSHLLEKGVDGIVVCGTTGEAAALGKHEQLAVLDA 63

Query: 62  TLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYI 121
            LE+V  +  V++G   N+  + L+   +  K    G+LV  PYY +P+Q GL   +K +
Sbjct: 64  VLELVPPE-RVVMGLAGNNLAELLQFQSEILKRPLAGLLVPPPYYIRPSQAGLEAFFKTV 122

Query: 122 SERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIKEA--NPDIDQIDRTVSLTKQ 179
           ++ + + +++Y++P RTG+     T  RI A  + +V IK+   NP       T++L   
Sbjct: 123 ADASSVPVILYDIPYRTGIAFEQATLLRIVAH-ERIVAIKDCGGNPAT-----TLALLSS 176

Query: 180 ARSDFMVWSGNDDRTFYLLCAGGDGVISVVSNVAPKQMVELCAEYFSGNLEKSREVHRKL 239
            + D  V  G D + F  LC G  G I+  ++V P+  V L  +     L   R    +L
Sbjct: 177 GKVD--VLCGEDHQIFGALCLGATGAIAASAHVHPELFVALYQQIRDNQLAVGRATFFQL 234

Query: 240 RPLMKALFVETNPIPVKAALNLMGFIENELRLPLVPASEKTVELLRNVL 288
            PL+ +LF+E NP PVK AL L G I +ELR P+  +SE T   L+ VL
Sbjct: 235 LPLIHSLFIEPNPAPVKTALALEGLIRDELRSPMQRSSETTAVRLKEVL 283


Lambda     K      H
   0.316    0.135    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 194
Number of extensions: 5
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 291
Length adjustment: 26
Effective length of query: 268
Effective length of database: 265
Effective search space:    71020
Effective search space used:    71020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 48 (23.1 bits)

Align candidate Pf1N1B4_5813 (4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.6303.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6303.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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