Alignments for a candidate for argE in Pseudomonas fluorescens FW300-N2E2

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate Pf6N2E2_1339 Acetylornithine deacetylase (EC 3.5.1.16)

Query= BRENDA::Q92Y75
         (374 letters)



>FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1339
          Length = 394

 Score =  285 bits (730), Expect = 1e-81
 Identities = 147/379 (38%), Positives = 225/379 (59%), Gaps = 10/379 (2%)

Query: 1   MQAAEILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKE 60
           +++  +L +LV F +V    N  ++ ++R YL+  G+  +++   E  ++N+ A+IGP  
Sbjct: 9   LRSRALLAELVSFATVSRDSNLALIEFVRDYLQGLGVNSELIYNAERTKANLLASIGPAV 68

Query: 61  ARGYIISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMP 120
             G ++SGH DVVP     WT DPF L     + +GRGT DMKG+LA+VLAAVP   + P
Sbjct: 69  PGGVVLSGHTDVVPVDGQAWTVDPFCLTEMDGKWFGRGTADMKGYLASVLAAVPVFLSSP 128

Query: 121 LRRPLHLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLT 180
           LRRP+HLA SYDEE GC GV  ++  L     QP   +IGEPT +R +  HKGK A R  
Sbjct: 129 LRRPVHLAFSYDEEVGCLGVHSLLEVLVRRIAQPALCLIGEPTQLRPVLGHKGKLAMRCH 188

Query: 181 VRGRSGHSSRPDQGLNAIHGVAGVLTQAVAEADRLVGGPFEH--VFEPPYSSLQIGTVKG 238
           VRG + HS+    G+NAI   A ++ + + E    +  P  H   F+P  S++Q+G V G
Sbjct: 189 VRGAACHSAYAPYGVNAIEQAARLIGR-LGEIGAQLAEPSRHDPRFDPACSTVQVGVVHG 247

Query: 239 GQAVNIIPDSCEVEFEARAISGVDPAELLAPVRKTAEALTTLGFE-------VEWQELSA 291
           G A+NI+P  C  +FE RA+   DP  ++  ++  AE       +       + ++ LSA
Sbjct: 248 GTALNIVPADCRFDFEVRALPDFDPLVVVEQLQGYAEQTLLPAMQAVAGDTAIRFEPLSA 307

Query: 292 YPALSLEPDAPLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGRAHKPDE 351
           YP L+  PD+  A L+ +L G +A   V++GTE GLF +AG+  ++CGPG + + HKPDE
Sbjct: 308 YPGLATSPDSAAARLIAQLCGSDAFGTVAFGTEGGLFHQAGVPTVVCGPGSMDQGHKPDE 367

Query: 352 YILIDELMACRAMVEALGA 370
           Y+ ++++ AC  +++ L +
Sbjct: 368 YVSVEQMAACDRLMDRLAS 386


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 413
Number of extensions: 11
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 394
Length adjustment: 30
Effective length of query: 344
Effective length of database: 364
Effective search space:   125216
Effective search space used:   125216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate Pf6N2E2_1339 (Acetylornithine deacetylase (EC 3.5.1.16))
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.29494.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29494.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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