Alignments for a candidate for argC in Pseudomonas fluorescens FW300-N2E2

Align N-acetylglutamylphosphate reductase (EC 1.2.1.38) (characterized)
to candidate Pf6N2E2_1484 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)

Query= reanno::Smeli:SMc01801
         (310 letters)



>FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1484
          Length = 309

 Score =  286 bits (733), Expect = 3e-82
 Identities = 146/308 (47%), Positives = 203/308 (65%), Gaps = 5/308 (1%)

Query: 3   PKIFIDGEHGTTGLQIRVRMAGRTDLELLSIPEAERRNAAMREDLLNSADIAILCLPDDA 62
           P +FIDG+ GTTGLQI  R+  R DL L ++    R++   R + +N  DIA+LCLPD A
Sbjct: 4   PLVFIDGDQGTTGLQIHQRLRERNDLRLFTLSPEHRKDPQRRAEAINHCDIAVLCLPDQA 63

Query: 63  SREAVAMVAGNNRVRIIDTSTAHRVAPDWAYGFAEMDKAQPQRIRDARHVANPGCYPTGA 122
           +R+AVA +  N+ VR+ID S+AHR  PDWAYGFAEM+  Q QRI  AR V+NPGCYPTGA
Sbjct: 64  ARDAVATIE-NSAVRVIDASSAHRTQPDWAYGFAEMNPQQAQRIAAARRVSNPGCYPTGA 122

Query: 123 IALIRPLRQAGILPDGYPVTVNAVSGYTGGGKQMIAQMEDDQNPDHIGAPHF-LYGLTLK 181
           I L+RPL +AG+LP  YP+ ++AVSGY+G G+     +++ +      A  F +YGL L 
Sbjct: 123 IGLLRPLLEAGLLPRDYPLNIHAVSGYSGKGR---VGVQEHEGAGAAQASAFQVYGLGLA 179

Query: 182 HKHVPEMKMHGLLERAPVFSPSVGKFAQGMIVQVPLYLEDLAAGATLETIHRALVDHYAG 241
           HKHVPE++    L + P+F P+ G F QG+++ +PL+   LA G +   +H  L+ HYA 
Sbjct: 180 HKHVPEIQQQSGLTQCPMFVPAYGAFRQGIVLTIPLHTRLLAPGVSAVQLHGCLMQHYAD 239

Query: 242 QSIVEVVPLDESAKLARIDATELAGSDAMKLFVFGTKGGAHVNLVALLDNLGKGASGAAV 301
              V+V+ + E+  L  +D   L G+D ++L VF       V L A+ DNLGKGA+GAAV
Sbjct: 240 ARHVQVMSMQEAKALTSLDPQALNGTDDLRLSVFDNDEAGQVLLAAVFDNLGKGAAGAAV 299

Query: 302 QNMDLMLS 309
           QN++LML+
Sbjct: 300 QNLNLMLA 307


Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 306
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 309
Length adjustment: 27
Effective length of query: 283
Effective length of database: 282
Effective search space:    79806
Effective search space used:    79806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate Pf6N2E2_1484 (N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))
to HMM TIGR01851 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.26836.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26836.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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