Alignments for a candidate for argE in Pseudomonas fluorescens FW300-N2E2

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate Pf6N2E2_367 Acetylornithine deacetylase (EC 3.5.1.16)

Query= BRENDA::Q92Y75
         (374 letters)



>FitnessBrowser__pseudo6_N2E2:Pf6N2E2_367
          Length = 385

 Score =  234 bits (598), Expect = 2e-66
 Identities = 137/373 (36%), Positives = 207/373 (55%), Gaps = 11/373 (2%)

Query: 6   ILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEARGYI 65
           I  +L+ F +V    N  ++ ++R  L S GI   ++    G ++N+FA+ GP++  G +
Sbjct: 8   IFERLLAFETVSSESNLALIEYVRELLLSKGIESLIVKDESGKKANLFASTGPRDLPGVL 67

Query: 66  ISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMPLRRPL 125
           +SGH DVVPAA   WT   F+  V   R+YGRG+ DMKGF+A  + A+   A   L RPL
Sbjct: 68  LSGHTDVVPAAGQAWTVPAFQATVRDGRVYGRGSCDMKGFIALAIDAMLDAADHSLNRPL 127

Query: 126 HLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTVRGRS 185
            LALS+DEE GC GV  ++  L     +P   +IGEPT M+ +  HKGK + R   RG  
Sbjct: 128 QLALSHDEEIGCVGVRRLLDVLHLAPVRPFLCVIGEPTNMQFVLGHKGKGSYRTYCRGLE 187

Query: 186 GHSSRPDQGLNAIHGVAGVLTQAVAEADRLV--GGPFEHVFEPPYSSLQIGTVKGGQAVN 243
            HSS   + +NAIH VA     A+ ++ + +   G  +  ++ PYS++ +G + GG+A+N
Sbjct: 188 AHSSLAPRSVNAIH-VACDFIAALRQSQQQLQEQGAQDADYDVPYSTVHVGQIVGGKALN 246

Query: 244 IIPDSCEVEFEARAISGVDPAELLAPVRKTAEALT------TLGFEVEWQELSAYPALSL 297
           I+P+ C ++FE R +   D    L  +R+ AE +       +   ++E + L+ YP L  
Sbjct: 247 IVPNLCTLDFEVRNLPDDDLDLFLEQLRERAEVIVREAKKLSSVADIEIETLNVYPGLDT 306

Query: 298 EPDAPLAALLEEL-TGREALPAVSYGTEAGLF-QRAGIDAIICGPGDIGRAHKPDEYILI 355
            P       L+   T       VS+GTE GLF QR  +  ++CGPG I +AHKPDE+I I
Sbjct: 307 HPSVEAVRFLKNFATPGTGTAKVSFGTEGGLFKQRLDVPVVVCGPGSIEQAHKPDEFIEI 366

Query: 356 DELMACRAMVEAL 368
            ++ A    +E L
Sbjct: 367 SQMDAGERFLEGL 379


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 355
Number of extensions: 12
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 385
Length adjustment: 30
Effective length of query: 344
Effective length of database: 355
Effective search space:   122120
Effective search space used:   122120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate Pf6N2E2_367 (Acetylornithine deacetylase (EC 3.5.1.16))
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.8023.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8023.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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