Alignments for a candidate for ilvA in Pseudomonas fluorescens FW300-N2E2

Align L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 (characterized)
to candidate Pf6N2E2_802 Threonine dehydratase biosynthetic (EC 4.3.1.19)

Query= SwissProt::Q9WYJ1
         (401 letters)



>FitnessBrowser__pseudo6_N2E2:Pf6N2E2_802
          Length = 335

 Score =  231 bits (589), Expect = 2e-65
 Identities = 126/306 (41%), Positives = 189/306 (61%), Gaps = 4/306 (1%)

Query: 20  RTALAYSSVLSEVTGGEIYLKMENLQKTGSFKIRGAYNKIAHLSEEERKRGVVAASAGNH 79
           RT L  +  LSE  G  I LK E+LQ T SFKIRGAYNK+  L+ E+R RGV+ ASAGNH
Sbjct: 29  RTPLQAAPALSEALGNRILLKREDLQPTFSFKIRGAYNKLVQLTPEQRARGVITASAGNH 88

Query: 80  AQGVALAAQIFGIPATIVMPRYAPLSKITKTRNLGAQVILEGNIFDEAYEAALRIQEKTG 139
           AQGVALAA+  GI A+IVMP   P  K+   RN GA+ IL G  F  A   AL + E++G
Sbjct: 89  AQGVALAARELGISASIVMPVTTPQLKVLGVRNRGAEAILHGESFPFALAHALELAEQSG 148

Query: 140 AVFVHPFNDPHVIAGQGTIGLEIMEDLP-DVEVVVVPVGGGGLISGVSVAIKSMNPEVKV 198
             FV PF+DP VIAGQGT+ +EI+   P  ++ + VPVGGGGLI+G++  +K + PEV++
Sbjct: 149 WEFVSPFDDPDVIAGQGTVAMEILRQHPGQLDAIFVPVGGGGLIAGIAAYVKYLRPEVRI 208

Query: 199 IGVQTENMPSMIASLRRGRAERVEGKPTLADGIAVKKPGDLTFELVKKYVDEMVAVNEEE 258
           IGV++++   + A+L  G    +    T ADG+AV + G    ++ +  VDE++ V+ ++
Sbjct: 209 IGVESQHSACLQAALAAGERVTLPEVGTFADGVAVAQIGAHGLDICRFCVDEVMTVSNDQ 268

Query: 259 IADAILFLLEQAKVVAEGAGAVGVAAVLNKL---DVKGKKVAIVISGGNIDVNMIDRIIN 315
           +  AI  + +  + + E +GA+ VA +   +     +G+ +  + SG NI+ + +  +  
Sbjct: 269 LCAAIKDIYDDTRSITEPSGALAVAGIKQYVAGTGARGQTLVAIDSGANINFDSLRHVAE 328

Query: 316 KGLVKS 321
           +  V +
Sbjct: 329 RAAVSA 334


Lambda     K      H
   0.317    0.136    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 272
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 335
Length adjustment: 30
Effective length of query: 371
Effective length of database: 305
Effective search space:   113155
Effective search space used:   113155
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate Pf6N2E2_802 (Threonine dehydratase biosynthetic (EC 4.3.1.19))
to HMM TIGR01124 (ilvA: threonine ammonia-lyase, biosynthetic (EC 4.3.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.27952.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27952.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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