Alignments for a candidate for hisF in Pseudomonas fluorescens GW456-L13

Align imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) (characterized)
to candidate PfGW456L13_358 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)

Query= BRENDA::Q5NMD6
         (255 letters)



>FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_358
          Length = 256

 Score =  302 bits (773), Expect = 5e-87
 Identities = 149/256 (58%), Positives = 194/256 (75%), Gaps = 5/256 (1%)

Query: 1   MTLCTRIIPCLDVADGRVVKGVNFTDLMDAGDPVEQAKVYDAAGADELCFLDISASHEGR 60
           M L  RIIPCLDV +GRVVKGV F ++ DAGDPVE A+ YD  GADE+ FLDI+AS +GR
Sbjct: 1   MALAKRIIPCLDVDNGRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGR 60

Query: 61  GTMLDVVARTAEVCFMPLTVGGGVRQVEDARALLLAGADKVAVNSAAVARPELVAEIADR 120
            T L  V R A   F+PLTVGGGVR V+D R LL AGADKV++N+AAV  PE V E A  
Sbjct: 61  DTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQH 120

Query: 121 FGAQCVVAAIDARR-----NGDHWEVYTHGGRRPTGINALDHALNLTRLGAGEILLTSMD 175
           FG+QC+V AIDA++         WE++THGGR+PTG++A++ A  +  LGAGEILLTSMD
Sbjct: 121 FGSQCIVVAIDAKKVSGPGETPRWEIFTHGGRKPTGLDAVEWAKKMEGLGAGEILLTSMD 180

Query: 176 KDGTRDGYDLELTRLVADSVPVPVIASGGVGNLDHMVEGVTKGHASALLAASIFHFGQYS 235
           +DG ++G+DL +TR ++D++ +PVIASGGVGNL H+ +G+ +GHASA+LAASIFHFG+Y+
Sbjct: 181 QDGMKNGFDLGVTRAISDALGIPVIASGGVGNLQHLADGIIEGHASAVLAASIFHFGEYT 240

Query: 236 LAEAHEALAKAGLTVR 251
           + EA   +A  G+ +R
Sbjct: 241 VQEAKAYMAHRGIVMR 256


Lambda     K      H
   0.320    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 239
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 256
Length adjustment: 24
Effective length of query: 231
Effective length of database: 232
Effective search space:    53592
Effective search space used:    53592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate PfGW456L13_358 (Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-))
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.11765.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11765.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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