Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate RR42_RS01125 RR42_RS01125 acetylglutamate kinase
Query= BRENDA::Q9HTN2 (301 letters) >FitnessBrowser__Cup4G11:RR42_RS01125 Length = 305 Score = 336 bits (862), Expect = 3e-97 Identities = 170/285 (59%), Positives = 218/285 (76%), Gaps = 5/285 (1%) Query: 12 AKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGGGPQ 71 A++L+EALPYIR+F GKT+V+KYGGNAM E+LK GFARDV+L+K VG+NPVVVHGGGPQ Sbjct: 22 AEILAEALPYIRKFHGKTIVVKYGGNAMTEEKLKHGFARDVILLKLVGMNPVVVHGGGPQ 81 Query: 72 IGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDA 131 I + LK++ FI GMRVTD TM+VVE VLGG+V +DIV LIN++GG A+GLTGKD Sbjct: 82 IDEALKKVGKVGTFIQGMRVTDEETMEVVEWVLGGEVQQDIVMLINQYGGQAVGLTGKDG 141 Query: 132 ELIRAKKLTVTRQTPEMTKP-EIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSN 190 LIRAK+L + P+ P IDIG VG++ +N ++ L FIPVI+PIG + Sbjct: 142 GLIRAKRL----KMPDRESPGAFIDIGFVGDIEAINPAVVKALQDDAFIPVISPIGFSDD 197 Query: 191 GESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVNELIADGTIYG 250 G++YNINAD+VAGK+AE LKAEKL+++TNI G+MDK G +LT LS ++ EL ADGTI G Sbjct: 198 GQAYNINADVVAGKMAEILKAEKLVMMTNIPGVMDKAGNLLTDLSAREIEELFADGTISG 257 Query: 251 GMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLI 295 GMLPKI AL+A + GV S HIIDGR+ +++LLEI T+ GT+I Sbjct: 258 GMLPKISSALDAAKSGVNSVHIIDGRIEHSLLLEILTEQAFGTMI 302 Lambda K H 0.318 0.138 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 336 Number of extensions: 13 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 301 Length of database: 305 Length adjustment: 27 Effective length of query: 274 Effective length of database: 278 Effective search space: 76172 Effective search space used: 76172 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate RR42_RS01125 RR42_RS01125 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))
../bin/blast/fastacmd -i /tmp/list.17545.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17545.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.