Alignments for a candidate for argE in Cupriavidus basilensis FW507-4G11

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate RR42_RS07840 RR42_RS07840 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>FitnessBrowser__Cup4G11:RR42_RS07840
          Length = 401

 Score =  280 bits (715), Expect = 6e-80
 Identities = 149/368 (40%), Positives = 214/368 (58%), Gaps = 11/368 (2%)

Query: 9   KLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEAR---GYI 65
           +LV + +     N  ++  +R +  + G+   +   P+GD++N+F T+         G +
Sbjct: 24  RLVSYDTTSRHSNLGLIEAVRDHFLAKGLRPHLSYNPQGDKANLFVTVPAASGSTDGGIV 83

Query: 66  ISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMPLRRPL 125
           +SGH DVVP     WT+DPF+  +   RLYGRGT DMKGF+   LA +P L    LR P+
Sbjct: 84  LSGHTDVVPVDGQNWTTDPFKPVIRDGRLYGRGTCDMKGFIGTSLALLPTLLEARLREPV 143

Query: 126 HLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTVRGRS 185
           H ALS+DEE GC G P+++A L E    P G I+GEPT MR I AHKG  A R  V+G++
Sbjct: 144 HYALSFDEEIGCMGAPYLLAELRERGVTPGGCIVGEPTSMRVIVAHKGINAYRCCVKGQA 203

Query: 186 GHSSRPDQGLNAIHGVAGVLTQAVAEADRL-VGGPFEHVFEPPYSSLQIGTVKGGQAVNI 244
            HSS   +G+NAI   A ++      AD     GP++  F+ P+++ Q GT+ GG A+N 
Sbjct: 204 AHSSLTPKGVNAIEYAARLICHIRDIADEFKANGPYDRDFDVPFTTAQTGTIHGGIALNT 263

Query: 245 IPDSCEVEFEARAISGVDPAELLAPVRKTAEALTTLGFEVEW-------QELSAYPALSL 297
           IP  CE  FE R + GVDP  + A ++  A  +       E         +++A P+L +
Sbjct: 264 IPALCEFVFEFRNLPGVDPEAIFARIQGYANDVLLPKMRAEHADAGLTINKIAAAPSLDV 323

Query: 298 EPDAPLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGRAHKPDEYILIDE 357
              A +  L+  LT    +  V+YGTEAGLFQRAGI A++CGPGDI +AHKPDE++ +D+
Sbjct: 324 AEQAAITQLVRALTADRDVNKVAYGTEAGLFQRAGIPAVVCGPGDIEQAHKPDEFVALDQ 383

Query: 358 LMACRAMV 365
           L AC A +
Sbjct: 384 LAACEAFL 391


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 428
Number of extensions: 13
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 401
Length adjustment: 30
Effective length of query: 344
Effective length of database: 371
Effective search space:   127624
Effective search space used:   127624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate RR42_RS07840 RR42_RS07840 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.4846.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4846.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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