Alignments for a candidate for thrB in Cupriavidus basilensis FW507-4G11

Align Homoserine kinase; HK; HSK; EC 2.7.1.39 (characterized)
to candidate RR42_RS15065 RR42_RS15065 serine kinase

Query= SwissProt::P29364
         (316 letters)



>FitnessBrowser__Cup4G11:RR42_RS15065
          Length = 327

 Score =  222 bits (566), Expect = 8e-63
 Identities = 135/327 (41%), Positives = 183/327 (55%), Gaps = 14/327 (4%)

Query: 1   MSVFTPLERSTLEAFLAPYDLGRLRDFRGIAEGSENSNFFVSLEHG----EFVLTLVERG 56
           M+VFT +    + ++L  Y+LG +RD RGIA G ENSNFF+++E      E+VLT+ ER 
Sbjct: 1   MAVFTTVSPDEIASWLLDYNLGEMRDLRGIASGIENSNFFLTMEQDGVTREYVLTIFERL 60

Query: 57  PVQDLPFFIELLDVLHEDGLPVPYALRTRDGEALRRLEGKPALLQPRLAGRHERQPNAHH 116
             + LP+++ L+  L    + VP  +  RDGE LR L+GKPA +  RL G  +  P    
Sbjct: 61  TFEQLPYYLHLMAHLAAHDIRVPAPIPGRDGEILRALKGKPATIVTRLPGGSQLAPGVGQ 120

Query: 117 CQEVGDLLGHLHAATRGRILERPSDRGLPWMLEQGANLAPRLPEQARALLAPALAEIAAL 176
           C +VGD+L  +H A +    ++P+ R LPW  +    + P L    +ALL   LA   A 
Sbjct: 121 CAQVGDMLARMHLAGQSYPRQQPNLRSLPWWQQTEGEILPFLDAGQQALLREELAHQTAF 180

Query: 177 --DAERPALPRANLHADLFRDNVLF-DGP----HLAGLIDFYNACSGWMLYDLAITLNDW 229
              A+  ALP    H DLFRDN LF DGP     L G  DFY A +   L+DLA+T+NDW
Sbjct: 181 FGGADYAALPGGPCHCDLFRDNALFEDGPAGQEKLGGFFDFYFAGNDKWLFDLAVTVNDW 240

Query: 230 CSN-TDGSLDPARARALLAAYANRRPFTALEAEHWPSMLRVACVRFWLSRLIAAEAFAGQ 288
           C +   G+LD  R +ALL AY   RP   +EA HW  MLR   +RFW+SRL         
Sbjct: 241 CIDLASGALDADRGQALLRAYHAVRPLGPIEARHWRDMLRAGALRFWISRLWDFYLPREA 300

Query: 289 DVL-IHDPAEFEIRLAQRQNVEIHLPF 314
           D+L  HDP  FE R+ +R+     LP+
Sbjct: 301 DMLQPHDPTHFE-RILRRRIEAAALPW 326


Lambda     K      H
   0.324    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 321
Number of extensions: 18
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 327
Length adjustment: 28
Effective length of query: 288
Effective length of database: 299
Effective search space:    86112
Effective search space used:    86112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)

Align candidate RR42_RS15065 RR42_RS15065 (serine kinase)
to HMM TIGR00938 (thrB: homoserine kinase (EC 2.7.1.39))

Software error:

../bin/blast/fastacmd -i /tmp/list.29994.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29994.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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