Alignments for a candidate for argH in Cupriavidus basilensis FW507-4G11

Align Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 (characterized)
to candidate RR42_RS15925 RR42_RS15925 argininosuccinate lyase

Query= SwissProt::Q9LAE5
         (461 letters)



>FitnessBrowser__Cup4G11:RR42_RS15925
          Length = 469

 Score =  426 bits (1094), Expect = e-123
 Identities = 226/463 (48%), Positives = 296/463 (63%), Gaps = 7/463 (1%)

Query: 3   KEQTWSQRFESALHPAIARFNASIGFDIELIEYDLTGSQAHAKMLAHTGIISSEEGEQLV 62
           K + WS RF   +   + R+ AS+ FD  L  +D+ GS AHA MLA  GII+  +  ++ 
Sbjct: 8   KGEAWSARFSEPMSDLVKRYTASVFFDKRLALFDIQGSLAHAAMLAKQGIIAEADRAEIE 67

Query: 63  AGLEQIRQEHRQGKFHPGVDAEDVHFAVEKRLTEIVGDVGKKLHTARSRNDQVGTDTRLY 122
            G+ QIR E   G F   +D EDVH  +E RLT +VGD GK+LHT RSRNDQV TD RL+
Sbjct: 68  RGMTQIRGEIEAGGFEWKLDLEDVHLNIEARLTALVGDAGKRLHTGRSRNDQVATDIRLW 127

Query: 123 LRDQIQQIKSELREFQGVLLDIAEKHVETLIPGYTHLQRAQPVSLAHHLLAYFQMAQRDW 182
           LR +I  I   L   +G LLD+AEK+ +T++PG+THLQ AQPV+  HHLLAY +M  RD 
Sbjct: 128 LRSEIDTIIGLLGALRGALLDLAEKNADTILPGFTHLQVAQPVTFGHHLLAYVEMFTRDA 187

Query: 183 ERLGDVSRRVNISPLGCGALAGTTFPIDRHYTAKLLDFDNIYANSLDGVSDRDFAIEFLC 242
           ER+ D  RRVN  PLG  ALAGT++PIDR + A+ L FD +  NSLD VSDRDFAIEF  
Sbjct: 188 ERMADCRRRVNRLPLGAAALAGTSYPIDREFVAQQLGFDGVCRNSLDAVSDRDFAIEFCA 247

Query: 243 AASLIMVHLSRLAEEVILWSSEEFRFVILKDSCATGSSIMPQKKNPDVPELVRGKTGRVF 302
           AA+L+M H+SR +EE+++W S    F+ + D   TGSSIMPQKKNPDVPEL RGKTGRV 
Sbjct: 248 AAALVMTHISRFSEELVIWMSPRVGFIDIADRFCTGSSIMPQKKNPDVPELARGKTGRVN 307

Query: 303 GHLQAMLVIMKGLPLAYNKDLQEDKEGLFDSVNTVKASLEAMTILLREGLEFRTQRLAQA 362
           GHL  +L +MKG PLAYNKD QEDKE LFD+V+TV  +L     ++  G+  +   +  A
Sbjct: 308 GHLIGLLTLMKGQPLAYNKDNQEDKEPLFDTVDTVADTLRIFADMV-PGISVKPDAMRAA 366

Query: 363 VTEDFSNATDVADYLAARGVPFREAYNLVGKVVKTSIAAGKLLKDLELEEWQQL------ 416
             + ++ ATD+ADYL   G+PFR+A+  V   V+        L DL + E +++      
Sbjct: 367 ALQGYATATDLADYLVKHGLPFRDAHEAVAHAVRACDDRRCDLADLTVAELREVTGLGDK 426

Query: 417 HPAFAADIYEAISPRQVVAARNSHGGTGFVQVSKALIAARAQI 459
                 D++  ++    VAARN  GGT   QV  A+ AARA +
Sbjct: 427 AALIGDDVHAVLTLEGSVAARNHIGGTAPAQVRAAIAAARATL 469


Lambda     K      H
   0.320    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 521
Number of extensions: 21
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 469
Length adjustment: 33
Effective length of query: 428
Effective length of database: 436
Effective search space:   186608
Effective search space used:   186608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate RR42_RS15925 RR42_RS15925 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.25477.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25477.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.