Alignments for a candidate for gatB in Synechococcus elongatus PCC 7942

Align Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Glu-AdT subunit B; EC 6.3.5.- (characterized)
to candidate Synpcc7942_0118 Synpcc7942_0118 aspartyl/glutamyl-tRNA amidotransferase subunit B

Query= SwissProt::Q9FV81
         (550 letters)



>FitnessBrowser__SynE:Synpcc7942_0118
          Length = 494

 Score =  544 bits (1402), Expect = e-159
 Identities = 277/485 (57%), Positives = 364/485 (75%), Gaps = 9/485 (1%)

Query: 69  DYEAVIGIETHVQLSTLTKAFCSCSNNYGSYPNTSICPVCMGLPGALPVLNSKVVEFGVR 128
           +YEAVIG+ETHVQL T TK F + S  +G+ PNT I PV +GLPG LPVLN KV+E+ V+
Sbjct: 10  EYEAVIGLETHVQLGTATKIFSNASTEFGADPNTHIDPVVLGLPGTLPVLNQKVLEYAVK 69

Query: 129 LGLALNCDLSLKSKFDRKQYFYPDLPKGYQISQFDIPIASGGYVDVDIPLEFGGGH-RRF 187
            GLALNC ++  SKFDRKQYFYPDLPK YQISQ+D+PIA  G++++++  +    + ++ 
Sbjct: 70  AGLALNCQIAPYSKFDRKQYFYPDLPKNYQISQYDLPIAEHGWIEIEVAEKGKEPYTKKI 129

Query: 188 GITRVHMEEDAGKLLHSDT-----GDYSQVDLNRAGVPLLEIVSEPDMRSGIEAAEYACE 242
           G+TR+HMEEDAGKL+H+ +       +S VD NRAGV L EIVSEPD+R+G EAAEYA E
Sbjct: 130 GVTRLHMEEDAGKLVHAGSDRLAGSTHSLVDYNRAGVALAEIVSEPDLRTGKEAAEYAQE 189

Query: 243 MQRIARYLGVSNGNMQEGSLRCDVNISIRPIGQAEFGTKVEIKNLNAFSAISRAIDFEIS 302
           ++RI RYLGVS+GNM EGSLRCDVNISIRP G  +FGTKVEIKN+N+F+AI RAI+FEI 
Sbjct: 190 LRRIMRYLGVSDGNMAEGSLRCDVNISIRPKGTEKFGTKVEIKNMNSFNAIQRAIEFEIE 249

Query: 303 RQALLYNQGKADQIVTETRLWEEGAQKTVTMRKKEGLADYRYFPEPDLPEVILTQEYVDS 362
           RQ      G  + IV ETRLW+EG Q T +MR KEG +DYRYFPEPDL  + +++   ++
Sbjct: 250 RQIRCLETG--EPIVQETRLWDEGKQVTKSMRSKEGSSDYRYFPEPDLGPIEVSETQRET 307

Query: 363 IRASLPELPEAKRRRY-EAMGLGMQDVLFLANDVSVAEYFDAVIGKGAEVKLAANWIMSD 421
            R+ LPELP  KR RY E  GL   D   L ++ S A+Y++A +  GA+ K AANW+M D
Sbjct: 308 WRSELPELPAQKRHRYAEQYGLSAYDARVLTDEKSTADYYEATVAAGADAKQAANWLMGD 367

Query: 422 IAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGKEILFELLAKGGTVKGMIKAK 481
           IAAY+   KL ++D+ L PQ+LAEL+  I+ GTISGKI KEIL ELL KGG+ K +++AK
Sbjct: 368 IAAYVNANKLLVSDLPLQPQDLAELVNLIEAGTISGKIAKEILPELLEKGGSPKAIVEAK 427

Query: 482 DLVQITDPAEIEKMVIQVVSENPKQLEQYRSGKTKLQGYFAGQVMKMSKGKANPGLLNKI 541
            L QI+DPA+IE +V ++++ +P +LEQ+R+GKTKLQG+F GQ+MK + G+ +P L N+I
Sbjct: 428 GLTQISDPAQIEALVDELLAAHPTELEQFRAGKTKLQGFFVGQLMKKTGGRVDPKLSNQI 487

Query: 542 LLEKL 546
           L +KL
Sbjct: 488 LNQKL 492


Lambda     K      H
   0.317    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 800
Number of extensions: 33
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 494
Length adjustment: 35
Effective length of query: 515
Effective length of database: 459
Effective search space:   236385
Effective search space used:   236385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate Synpcc7942_0118 Synpcc7942_0118 (aspartyl/glutamyl-tRNA amidotransferase subunit B)
to HMM TIGR00133 (gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.7177.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7177.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.