Alignments for a candidate for ilvI in Synechococcus elongatus PCC 7942

Align acetolactate synthase (subunit 2/2) (EC 2.2.1.6) (characterized)
to candidate Synpcc7942_0139 Synpcc7942_0139 acetolactate synthase 3 catalytic subunit

Query= BRENDA::P9WG41
         (618 letters)



>FitnessBrowser__SynE:Synpcc7942_0139
          Length = 612

 Score =  555 bits (1430), Expect = e-162
 Identities = 305/573 (53%), Positives = 380/573 (66%), Gaps = 17/573 (2%)

Query: 36  QQLTGAQAVIRSLEELGVDVIFGIPGGAVLPVYDPLFDSK---KLRHVLVRHEQGAGHAA 92
           Q+ TGA A+I SL + GV  IFG PGGA+LP+YD L  ++   +++H+LVRHEQGA HAA
Sbjct: 10  QRATGAYALIDSLCQHGVKHIFGYPGGAILPIYDELHRAEAAGRVQHILVRHEQGAVHAA 69

Query: 93  SGYAHVTGRVGVCMATSGPGATNLVTPLADAQMDSIPVVAITGQVGRGLIGTDAFQEADI 152
             Y+  TG VGVC ATSGPGATNLVT +A AQMDSIP+V +TGQV R  IGTDAFQE DI
Sbjct: 70  DAYSRATGEVGVCFATSGPGATNLVTGIATAQMDSIPMVVVTGQVPRTAIGTDAFQETDI 129

Query: 153 SGITMPITKHNFLVRSGDDIPRVLAEAFHIAASGRPGAVLVDIPKDVLQGQCTFSWPP-- 210
            GIT+PI KH+++VR   D+ R++AEAFHIA SGRPG VL+D+PKDV  G   F + P  
Sbjct: 130 YGITLPIVKHSYVVRDPRDMARIVAEAFHIAQSGRPGPVLIDVPKDV--GTEEFDYVPVA 187

Query: 211 --RMELPGYKPNTKPHSRQVREAAKLIAAARKPVLYVGGGVIRGEATEQLRELAELTGIP 268
              + LPGY+P T+ + RQ+ +A  L+  AR+P+LYVGGG I   A  +LR  AE   +P
Sbjct: 188 PGDIRLPGYRPTTRGNPRQIAQAIALVKVARRPLLYVGGGAITAGAHAELRAFAERFQLP 247

Query: 269 VVTTLMARGAFPDSHRQNLGMPGMHGTVAAVAALQRSDLLIALGTRFDDRVTGKLDSFAP 328
           V TTLM +GAF + H   LGM GMHGT  A  A+   DLLIA+G RFDDRVTGKLD FA 
Sbjct: 248 VTTTLMGKGAFDERHPLALGMLGMHGTAYANFAVSECDLLIAVGARFDDRVTGKLDEFAS 307

Query: 329 EAKVIHADIDPAEIGKNRHADVPIVGDVKAVITELIAMLRHH-HIPGTIEMADWWAYLNG 387
           +A+VIH DIDPAE+GKNR  +VPIVGDV+ V+ EL+A                W   +  
Sbjct: 308 KAQVIHVDIDPAEVGKNRVPEVPIVGDVRQVLNELLARAEEQISADDATRTQPWLDRIAY 367

Query: 388 VRKTYPLSYGPQSDGSLSPEYVIEKLGEIAGPDAVFVAGVGQHQMWAAQFIRYEKPRSWL 447
            ++ YPL   P     LSP+ VI  LGE A PDA F   VGQHQMWAAQFI+   PR W+
Sbjct: 368 WKREYPLQI-PYYADVLSPQQVIHSLGE-AAPDAYFTTDVGQHQMWAAQFIK-NGPRRWI 424

Query: 448 NSGGLGTMGFAIPAAMGAKIALPGTEVWAIDGDGCFQMTNQELATCAVEGIPVKVALINN 507
           +S GLGTMGF +PAAMGA++ALP   V  + GD    M  QEL T A   IP+KV ++NN
Sbjct: 425 SSAGLGTMGFGMPAAMGAQMALPDDTVICVAGDASILMNIQELGTLAQYNIPIKVVVVNN 484

Query: 508 GNLGMVRQWQSLFYAERYSQTDLATHSHRIPDFVKLAEALGCVGLRCEREEDVVDVINQA 567
           G  GMVRQWQ  FY ERYS +++      +PDFVKLAEA G  G+R    +++   I + 
Sbjct: 485 GWQGMVRQWQEAFYDERYSNSNM---ERGMPDFVKLAEAFGIKGMRVSHPDELQAAIAEM 541

Query: 568 RAINDCPVVIDFIVGADAQVWPMVAAGTSNDEI 600
            A  D PV +D IV  D   +PMV +G SN ++
Sbjct: 542 LAF-DGPVFLDAIVKRDENCYPMVPSGHSNAQM 573


Lambda     K      H
   0.319    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1138
Number of extensions: 55
Number of successful extensions: 7
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 612
Length adjustment: 37
Effective length of query: 581
Effective length of database: 575
Effective search space:   334075
Effective search space used:   334075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)

Align candidate Synpcc7942_0139 Synpcc7942_0139 (acetolactate synthase 3 catalytic subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.15527.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15527.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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