Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate Synpcc7942_1001 Synpcc7942_1001 aspartate kinase
Query= BRENDA::P74569
(600 letters)
>FitnessBrowser__SynE:Synpcc7942_1001
Length = 616
Score = 703 bits (1814), Expect = 0.0
Identities = 392/606 (64%), Positives = 459/606 (75%), Gaps = 15/606 (2%)
Query: 1 MALIVQKFGGTSVGTVERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQISPN 60
MALIVQK+GGTSVG+VERI AVAQRI +TV GN +VVVVSAMG STD L+ LA IS N
Sbjct: 20 MALIVQKYGGTSVGSVERITAVAQRIAQTVAAGNQVVVVVSAMGHSTDELLKLANAISAN 79
Query: 61 PCRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILEIRPDR 120
P RRE+DMLL+TGEQVSIALLS+AL E AIS+TGAQVGI+TEA HSRARILEI P R
Sbjct: 80 PSRRELDMLLATGEQVSIALLSMALHEQGCDAISMTGAQVGIITEAHHSRARILEIDPQR 139
Query: 121 LEHHLREGKVVVVAGFQGISSVEH---LEITTLGRGGSDTSAVALAAALKADFCEIYTDV 177
L+ L G+VVVVAGFQGI+S + EITTLGRGGSDTSAVALAAAL AD CEIYTDV
Sbjct: 140 LQSQLDAGRVVVVAGFQGIASSDRTALTEITTLGRGGSDTSAVALAAALNADRCEIYTDV 199
Query: 178 PGILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWSDE 237
PGILTTDPRLVPEA L+ EITCDEMLELASLGA VLHPRAVEIARNYG+ LVVRSSW+ E
Sbjct: 200 PGILTTDPRLVPEAHLLEEITCDEMLELASLGASVLHPRAVEIARNYGVRLVVRSSWTQE 259
Query: 238 PGTKVVAPPVQ-NRSLVGLEIAKAVDGVEYDADQAKVALLRVPDRPGVASKLFRDIAQQQ 296
PGT VVAPP + +RSL GLEI + VDG+ D DQAKVALL VPDRPG+A+ LF ++AQ+
Sbjct: 260 PGTGVVAPPRRSDRSLQGLEIGRPVDGLALDTDQAKVALLHVPDRPGIAASLFGEMAQRG 319
Query: 297 VDIDLIIQSIHDGNSNDIAFTVVKDLLNTAEAVTSAIAPALRSYPEADQEAEIIVEKGIA 356
V++DLIIQSIH+GNSNDI+FTV + L AEA T+ + AD E E +A
Sbjct: 320 VNVDLIIQSIHEGNSNDISFTVSQADLEKAEAGTTQLL--------ADLGGEQQSEAAVA 371
Query: 357 KIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMISTSEVKVSCVIDQRDADRAIAALSNAF 416
K++I+G G++GRPGIAA+MF LA G+NI+MISTSEVKVSCVI D RAIAAL +F
Sbjct: 372 KVSISGVGIVGRPGIAAQMFSALAQGGINIQMISTSEVKVSCVIAAADQQRAIAALQESF 431
Query: 417 GVTLSPPKNQTD--TSHLPAVRGVALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVD 474
+ + TD T+ LPAVRGVALD+DQA++AI +VPD PGMAA +F LA+ ISVD
Sbjct: 432 ELEEAIAATATDACTTDLPAVRGVALDRDQARLAILNVPDLPGMAATIFQILADRQISVD 491
Query: 475 MIIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQPLIKDWLDAAIVVNKAIAKVSIVG 534
MIIQSQR RI+ G PCRDIA + D+ A A LQ D ++ + IAKVSIVG
Sbjct: 492 MIIQSQRGRIHNGQPCRDIACTLPPADAELAAAALQ-AFADQHGCSLEIQTEIAKVSIVG 550
Query: 535 SGMIGHPGVAAHFFAALAQENINIEMIATSEIKISCVVPQDRGVDALKAAHSAFNLAGTK 594
SGM+ PGVAA FAALA INI MIATSEIK+SC+V + V+AL+ H+AF LA +
Sbjct: 551 SGMVQQPGVAAQMFAALANHGINIHMIATSEIKVSCIVDASQAVEALQTVHAAFGLASDR 610
Query: 595 TVTVPA 600
+ VPA
Sbjct: 611 RIEVPA 616
Lambda K H
0.318 0.132 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 965
Number of extensions: 35
Number of successful extensions: 17
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 616
Length adjustment: 37
Effective length of query: 563
Effective length of database: 579
Effective search space: 325977
Effective search space used: 325977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Align candidate Synpcc7942_1001 Synpcc7942_1001 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.9490.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9490.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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