Alignments for a candidate for argC in Synechococcus elongatus PCC 7942

Align N-acetyl-gamma-glutamyl-phosphate reductase; Short=AGPR; EC 1.2.1.38 (characterized, see rationale)
to candidate Synpcc7942_1433 Synpcc7942_1433 N-acetyl-gamma-glutamyl-phosphate reductase

Query= uniprot:E4PLW0
         (388 letters)



>FitnessBrowser__SynE:Synpcc7942_1433
          Length = 352

 Score =  291 bits (744), Expect = 3e-83
 Identities = 148/350 (42%), Positives = 214/350 (61%), Gaps = 2/350 (0%)

Query: 41  EKMVIKVGIVGGTGYTGVELLRILAVHPEVSVSCITSRSEAGMPVAEMYPNLRGHYDLAF 100
           E   + VGI+G +GY GV+L+R+L  HP++ V+ +     AG   AE+YP+L  H +L  
Sbjct: 3   ESSRLPVGIIGASGYGGVQLVRLLQDHPQLEVAYLGGDRSAGKEFAELYPHLGPHLNLTI 62

Query: 101 SEPDVN-VLGACDLVFFATPHGVAMRMVPELMSAGVRVVDLSADFRLKDLDVWANWYGMA 159
              DV+ +   C  VF + P+G+A  + P L+  G +V+DLSAD+R  DL  +A WYG  
Sbjct: 63  EAIDVDRIAERCAAVFLSLPNGLAYDLAPALLERGCKVLDLSADYRFHDLKTYALWYGGD 122

Query: 160 HESPEWAEKAVYGLPEVVRDEIRNAQLVANPGCYPTAVQLGFLPLLEQGLVDPKRLIADA 219
            +    A  A+YGLPE+ R+ I NAQL+  PGCYPTA  L   P L+QGL+DP  ++ DA
Sbjct: 123 RQDAAVAHTAIYGLPELYRNRIANAQLIGCPGCYPTASLLALAPALKQGLIDPDTIVIDA 182

Query: 220 KSGASGAGRQGKIGMLHGEIGESFKAYGASGHRHLPEIRQGLCGAAGGDVGVTFVPHLIP 279
           KSG SGAGRQ K   L  E G S  AYG + HRH PEI Q     +G +V + F PHL+P
Sbjct: 183 KSGTSGAGRQAKTNALLAEAGNSVGAYGVARHRHTPEIEQICSDLSGHEVLLQFTPHLMP 242

Query: 280 MIRGIEATLYAELKNP-ADFDRLQALFEQRFDDEPFVDVMPFGSHPETRSVRGANQCRMA 338
           M+RGI AT+YA+L++P    +    +++  + + P V V+  G++P+T+   G N C + 
Sbjct: 243 MVRGIHATIYAKLRDPNLTTEDCLTVYQAFYRNAPMVKVLTHGTYPQTKWAAGTNLCYLG 302

Query: 339 LHRQEQSNIVIVSSVIDNLVKGAAGQAVQNMNIMFGLKETMGLEAPALLP 388
           L    ++  +++ S IDNL+KG AGQA+Q +N+M G +E +GL      P
Sbjct: 303 LEVDARTGRIVLLSAIDNLIKGQAGQAIQCLNLMQGWEEGLGLPTLCYYP 352


Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 386
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 352
Length adjustment: 30
Effective length of query: 358
Effective length of database: 322
Effective search space:   115276
Effective search space used:   115276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate Synpcc7942_1433 Synpcc7942_1433 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.11552.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11552.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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