Alignments for a candidate for cysK in Synechococcus elongatus PCC 7942

Align cysteine synthase (EC 2.5.1.47) (characterized)
to candidate Synpcc7942_1466 Synpcc7942_1466 cysteine synthase

Query= BRENDA::A8YBP8
         (315 letters)



>FitnessBrowser__SynE:Synpcc7942_1466
          Length = 334

 Score =  471 bits (1213), Expect = e-138
 Identities = 235/312 (75%), Positives = 271/312 (86%)

Query: 1   MLIARDITQLVGRTPLVQLNRIPVAEGVKARIVVKLESMNPAASVKDRIGVSMVEDAEAA 60
           M IA++IT+L+GRTPLVQLNRIPVA+G  ARIVVKLES NP+ASVKDRIG+SM+ +AE  
Sbjct: 15  MRIAQNITELIGRTPLVQLNRIPVADGCLARIVVKLESFNPSASVKDRIGISMILEAERK 74

Query: 61  GLIHPDKTILVEPTSGNTGIALAMVAAAKGYRLVLTMPETMSLERRAMLKAYGAQLELTP 120
           GLI PD+T LVEPTSGNTGIALAM AAA+GYRL+LTMP+TMS ERRAML+AYGA LELTP
Sbjct: 75  GLIAPDRTTLVEPTSGNTGIALAMAAAARGYRLILTMPDTMSSERRAMLRAYGATLELTP 134

Query: 121 GSQGMEGAITRAEEIVENTPNAYSLQQFRNPANPKIHRETTAEEIWADTDGLVDIVIGGV 180
           G +GM G I RA+EIV + P AY LQQF+NPANPKIHRETTAEEIWADTDG VDI+I GV
Sbjct: 135 GIEGMAGCIQRAQEIVASHPEAYMLQQFKNPANPKIHRETTAEEIWADTDGTVDILISGV 194

Query: 181 GTGGTITGIAETIKPRRPQFQAIAVEPSNSPVLSGGQPGPHKIQGIGAGFIPAIFRPELI 240
           GTGGTITG+AE +K R+P FQA AVEP+NSPVLSGG+PGPHKIQGIGAGF+P +   +LI
Sbjct: 195 GTGGTITGVAEVLKERKPSFQAFAVEPANSPVLSGGRPGPHKIQGIGAGFVPEVLATQLI 254

Query: 241 DEVIIVDDTEAFAYARRLARQEGLLSGISAGAALWAAIQVGKRPENEDKLIVMIQPSFGE 300
           DEV+ V D EA AY RRLAR+EGLLSGIS+GAA+ AA+QV +RPEN DKLIV+I PSFGE
Sbjct: 255 DEVVTVSDDEAIAYGRRLAREEGLLSGISSGAAVAAAVQVARRPENTDKLIVVILPSFGE 314

Query: 301 RYLSTALFKDLE 312
           RYLST LF++ E
Sbjct: 315 RYLSTPLFQEPE 326


Lambda     K      H
   0.317    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 399
Number of extensions: 11
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 334
Length adjustment: 28
Effective length of query: 287
Effective length of database: 306
Effective search space:    87822
Effective search space used:    87822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate Synpcc7942_1466 Synpcc7942_1466 (cysteine synthase)
to HMM TIGR01139 (cysK: cysteine synthase A (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.10398.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10398.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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