Alignments for a candidate for serA in Synechococcus elongatus PCC 7942

Align D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 (characterized, see rationale)
to candidate Synpcc7942_1501 Synpcc7942_1501 D-3-phosphoglycerate dehydrogenase

Query= uniprot:Q6LWW6
         (523 letters)



>FitnessBrowser__SynE:Synpcc7942_1501
          Length = 546

 Score =  432 bits (1111), Expect = e-125
 Identities = 237/528 (44%), Positives = 347/528 (65%), Gaps = 8/528 (1%)

Query: 1   MSKILITDPLHESAVEILKQAGEVEVATGLTVEELKLKIKDVDALVIRSGTTATREIIEA 60
           M K+L++DP+ +  ++IL Q  +V+V TGL+  EL   I + DAL++RSGT  T E+IEA
Sbjct: 18  MPKVLVSDPIDQVGLDILSQVAQVDVKTGLSPSELAQIIGEYDALMLRSGTRVTAEVIEA 77

Query: 61  SENLKVIARAGVGVDNVDLDAATEKGIVVVNAPDASSISVAELLFGMMLAAARNIPQATA 120
            + L++I RAGVGVDNVD+ AAT +GIVVVN+P+ ++I+ AE    MML+ +R+IP A A
Sbjct: 78  GQKLRIIGRAGVGVDNVDVPAATRRGIVVVNSPEGNTIAAAEHTLAMMLSLSRHIPDANA 137

Query: 121 SIKSGKWDRKSFKGMEIYGKTLGIVGLGRIGQQVAKRAQAFGMTIVAYDPYIPEDVASEL 180
           S KSG WDRKSF G E+Y KTLG+VGLG+IG  VA  A+A GM ++AYDP+I  + A ++
Sbjct: 138 STKSGGWDRKSFVGTEVYKKTLGVVGLGKIGSHVATVAKAMGMKLLAYDPFISAERAEQI 197

Query: 181 GIKLLTVDELCTVSDFITLHVPLTPKTKHMIGKEQIALMKSNMVIMNCARGGLIDEAALY 240
           G +L+ +D L   +D+ITLH+P TP+T ++I  E +A MK    I+NCARGG+I+E AL 
Sbjct: 198 GARLVELDILFQEADYITLHIPKTPETANLINAETLAKMKPTTRIINCARGGVINEQALA 257

Query: 241 DALNSGKIKAAALDVFEQEP-PKESPLLTL-NNLIGTPHQGASTEEAQLSAGTIVAEQTV 298
           DA+ +GKI  AALDV++QEP   +SPL  L  NLI TPH GAST EAQ++    VAEQ  
Sbjct: 258 DAIAAGKIGGAALDVYDQEPLQADSPLRALGKNLILTPHLGASTTEAQVNVAVDVAEQIR 317

Query: 299 KILKGESAENVVNLPMVPTEKMKKLKPYMVLAEKMGSMAIQYLDNSIELLEITYMGGLAK 358
            +L G  A + VN+P +  + ++KL+PY+ LAE +G++  Q     +E L +   G LA 
Sbjct: 318 DVLLGLPARSAVNIPGLYPDILEKLRPYLQLAETLGNLLSQVAGGRLEQLTVRLQGELAA 377

Query: 359 EKTEILKRSFLKGILAPILLAGVNLVNAPVIAKSRNIKIAEGTMSES---DY-GNSIKIS 414
           ++++ +  + LKG+L   L   VN VNA + AK R I+I E T  ES   DY G S+++ 
Sbjct: 378 QQSQPIVVAALKGLLTQALRERVNYVNAMIEAKERGIRIIE-TRDESVRDDYAGGSLQLV 436

Query: 415 AKGENDEISIIGS-IEHNEVVFREINGYRMDIKPEGTICIIKHIDRPGMVGKVGVLLGEH 473
           A G N E  ++G+ +   E+    ++ + +++ P   +   +H D PG++GK+G LLG  
Sbjct: 437 ATGSNGEHRVMGALLGDGEIRITNVDEFPVNVPPSRYMLFTRHRDMPGIIGKIGSLLGSF 496

Query: 474 GINIAGMQVGRREPGGHSIMFLDIDHMISDEVLDEIRKMENVRAAKSI 521
            +NIA MQVGRR   G ++M L +D  + + +L EI K+  +  A ++
Sbjct: 497 NVNIASMQVGRRIVRGDAVMVLSLDDPLPEGILAEITKVAGISDAYTV 544


Lambda     K      H
   0.316    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 694
Number of extensions: 28
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 546
Length adjustment: 35
Effective length of query: 488
Effective length of database: 511
Effective search space:   249368
Effective search space used:   249368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate Synpcc7942_1501 Synpcc7942_1501 (D-3-phosphoglycerate dehydrogenase)
to HMM TIGR01327 (serA: phosphoglycerate dehydrogenase (EC 1.1.1.95))

Software error:

../bin/blast/fastacmd -i /tmp/list.5492.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5492.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.