Alignments for a candidate for icd in Synechococcus elongatus PCC 7942

Align isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) (characterized)
to candidate Synpcc7942_1719 Synpcc7942_1719 isocitrate dehydrogenase

Query= BRENDA::A8YGS2
         (478 letters)



>FitnessBrowser__SynE:Synpcc7942_1719
          Length = 475

 Score =  791 bits (2043), Expect = 0.0
 Identities = 377/474 (79%), Positives = 421/474 (88%)

Query: 5   YEKITPPTTGSTITFSDGKPLVPDDPIIPFIRGDGTGVDIWPATAKVIDAAIAAAYGGQR 64
           YEKI PP+ GS I F  GKP+VPD+PIIPFIRGDGTGVDIWPAT +V+DAA+A AYGGQR
Sbjct: 2   YEKIQPPSEGSKIRFEAGKPIVPDNPIIPFIRGDGTGVDIWPATERVLDAAVAKAYGGQR 61

Query: 65  KIHWFKVYAGDEACEIYGTYQYLPQDTLTAIKEYGIAIKGPLTTPIGGGIRSLNVALRQI 124
           KI WFKVYAGDEAC++YGTYQYLP+DTLTAI+EYG+AIKGPLTTPIGGGIRSLNVALRQI
Sbjct: 62  KITWFKVYAGDEACDLYGTYQYLPEDTLTAIREYGVAIKGPLTTPIGGGIRSLNVALRQI 121

Query: 125 FDLYACVRPCRYYAGTPSPHKTPEKLDVIVYRENTEDIYLGIEWKQGTEIADKLINYLNT 184
           FDLYACVRPCRYY GTPSPH+TPE+LDV+VYRENTEDIYLGIEWKQG    D+LI  LN 
Sbjct: 122 FDLYACVRPCRYYTGTPSPHRTPEQLDVVVYRENTEDIYLGIEWKQGDPTGDRLIKLLNE 181

Query: 185 ELIPATPEHGKKQIPLDAGIGIKPISKTGSQRLVRRAIERALTLPKPKNQVTLVHKGNIM 244
           + IP +P  GKKQI LD+GIGIKPISKTGSQRL+RRAIE AL L   K  VTLVHKGNIM
Sbjct: 182 DFIPNSPSLGKKQIRLDSGIGIKPISKTGSQRLIRRAIEHALRLEGRKRHVTLVHKGNIM 241

Query: 245 KYTEGAFRDWGYELAKSEFRDVCVTEMESWILSNKEKNPDLSIEDNARMVEPGYDALTDE 304
           K+TEGAFRDWGYELA +EFR  CVTE ESWIL+N+E  PDLS+EDNAR++EPGYDA+T E
Sbjct: 242 KFTEGAFRDWGYELATTEFRTDCVTERESWILANQESKPDLSLEDNARLIEPGYDAMTPE 301

Query: 305 KKAKICQEVTSVLDAIWETHGNGQWKDKIMVNDRIADSIFQQIQTRPDEYSILATMNLNG 364
           K+A +  EV +VLD+I  THGNGQWK K++V+DRIADSIFQQIQTRP EYS+LATMNLNG
Sbjct: 302 KQAAVVAEVKAVLDSIGATHGNGQWKSKVLVDDRIADSIFQQIQTRPGEYSVLATMNLNG 361

Query: 365 DYLSDAAAAIVGGLGMGPGANIGDTCAIFEATHGTAPKHAGLDRINPGSVILSGVMMLEY 424
           DY+SDAAAA+VGGLGM PGANIGD  AIFEATHGTAPKHAGLDRINPGSVILSGVMMLEY
Sbjct: 362 DYISDAAAAVVGGLGMAPGANIGDEAAIFEATHGTAPKHAGLDRINPGSVILSGVMMLEY 421

Query: 425 MGWQEAADLIKKGIAAAVANRQVTYDLARLMEPPVNPPLKCSEFADAIISHFGD 478
           +GWQEAADLI KGI+ A+ANR+VTYDLARLMEP V+ PLKCSEFA+AI+ HF D
Sbjct: 422 LGWQEAADLITKGISQAIANREVTYDLARLMEPAVDQPLKCSEFAEAIVKHFDD 475


Lambda     K      H
   0.317    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 844
Number of extensions: 27
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 475
Length adjustment: 33
Effective length of query: 445
Effective length of database: 442
Effective search space:   196690
Effective search space used:   196690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate Synpcc7942_1719 Synpcc7942_1719 (isocitrate dehydrogenase)
to HMM TIGR00183 (icd: isocitrate dehydrogenase, NADP-dependent (EC 1.1.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.26436.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26436.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.