Alignments for a candidate for thrC in Synechococcus elongatus PCC 7942

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate Synpcc7942_2612 Synpcc7942_2612 threonine synthase

Query= BRENDA::O66740
         (352 letters)



>FitnessBrowser__SynE:Synpcc7942_2612
          Length = 366

 Score =  428 bits (1101), Expect = e-124
 Identities = 211/351 (60%), Positives = 271/351 (77%), Gaps = 4/351 (1%)

Query: 4   WQGIIKQYKKYLPVDENTPIVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFK 63
           W G+I+ Y+ YLPV + TPIVTL+EGNTPLI    +AR IG   ++++KY+GLNPTGSFK
Sbjct: 18  WPGLIEAYRDYLPVTDTTPIVTLHEGNTPLIPVPTIAREIGRGVEVFVKYDGLNPTGSFK 77

Query: 64  DRGMTLAISKAVEAGKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAM 123
           DRGMT+AI+KA EAG +AVICASTGNTSA+AAAYA R GLRA+VL+P G VA GKL+QA+
Sbjct: 78  DRGMTMAITKAKEAGAKAVICASTGNTSAAAAAYARRGGLRAFVLIPDGFVAQGKLAQAL 137

Query: 124 IYGAKVLAIQGTFDDALNIVRKIGENFPVEIVNSVNPYRIEGQKTAAFEICDTLGEAPDY 183
           +YGA+VLAI+G FD AL IVR++   +PV +VNS+NPYR+EGQKTAAFE+ D LGEAPD+
Sbjct: 138 LYGAEVLAIKGNFDRALEIVREVANQYPVTLVNSLNPYRLEGQKTAAFELIDVLGEAPDW 197

Query: 184 HFIPVGNAGNITAYWKGFKIYYEEGKITKLPRMMGWQAEGAAPIVKGYPIKNPQTIATAI 243
             IP+GNAGNI+AYW GF+ Y+ +G   KLPRMMG+QA G+AP+V G  +++P TIATAI
Sbjct: 198 LCIPMGNAGNISAYWMGFQEYHAKGLSQKLPRMMGFQAAGSAPLVTGEIVQSPDTIATAI 257

Query: 244 KIGNPYSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLV 303
           +IGNP +W+ AL+  +ES G  +AV+D+EIL AY+++A  EG+FCEPASAASVAG++K  
Sbjct: 258 RIGNPANWQRALRVHEESNGAFNAVTDAEILDAYRMLAGQEGIFCEPASAASVAGMLKCK 317

Query: 304 REGFFKGGEVVTCTLTGNGLKDPDTAIKVCEEPIT--VPPDFDEVVKVLGF 352
            E     G  + C LTGNGLKDP +AI+         + PD D V   +GF
Sbjct: 318 DE--IPDGATIVCVLTGNGLKDPSSAIEFSHTGFKAGIEPDLDIVAHTMGF 366


Lambda     K      H
   0.317    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 475
Number of extensions: 18
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 366
Length adjustment: 29
Effective length of query: 323
Effective length of database: 337
Effective search space:   108851
Effective search space used:   108851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate Synpcc7942_2612 Synpcc7942_2612 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.24392.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24392.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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