Alignments for a candidate for argI in Cereibacter sphaeroides ATCC 17029

Align ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate WP_002719162.1 RSPH17029_RS03670 ornithine carbamoyltransferase

Query= BRENDA::Q98BB6
         (303 letters)



>NCBI__GCF_000015985.1:WP_002719162.1
          Length = 308

 Score =  358 bits (919), Expect = e-104
 Identities = 176/307 (57%), Positives = 220/307 (71%), Gaps = 7/307 (2%)

Query: 3   VRHFTDLSTVSEGDLRFMLDDAVVRKARLKAG-----ERTRPLEGKVLAMIFDKPSTRTR 57
           + HF D+      +LR M+D A   KA  K       +  +PL G+++A+IF+KPSTRTR
Sbjct: 1   MNHFLDIHKTDTAELRQMMDSAHAMKAARKGRPKGQLDEDQPLAGRMVALIFEKPSTRTR 60

Query: 58  VSFDVGMRQLGGETIMLTGTEMQLGRSETIADTAKVLSRYVDAIMIRTTSHDRLLELTEN 117
           VSFDVG+RQ+GG+T++L+G EMQLG  ETIADTA+VLSRYVD IMIRT     LLE+ E+
Sbjct: 61  VSFDVGVRQMGGQTMVLSGKEMQLGHGETIADTARVLSRYVDLIMIRTFEEATLLEMAEH 120

Query: 118 ATVPVINGLTDDTHPCQLMADIMTFEEHRGPVAGKTIAWTGDGNNVLHSLLEASARFRFN 177
           ATVPVINGLT+ THPCQ+MAD+MT+EEHRGP+AG+ + W GDGNNV  S L A+ +F F+
Sbjct: 121 ATVPVINGLTNRTHPCQIMADVMTYEEHRGPIAGRKVVWAGDGNNVCASFLHAAGQFGFD 180

Query: 178 LNVAVPEGSEPAQKHIDWSKAHGGKLHFTRSPEEAVDQADCVVTDCWVSM--GQEHRARG 235
                P   +P  + + +++  G ++   R P +AV  AD VVTD WVSM   Q  R R 
Sbjct: 181 FTFTGPSTLDPEAEFVGYAREKGRRVSIERDPAKAVAGADLVVTDTWVSMHDPQSARERR 240

Query: 236 HNVFSPYQVNAKLMAHAKPDALFMHCLPAHRGEEVTDEVIDGPHSVVFDEAENRLHAQKA 295
           HN   PYQVN  LMA AKPDALFMHCLPAHR +E T  V+DGPHSV+FDEAENRLHAQKA
Sbjct: 241 HNQLRPYQVNEALMAQAKPDALFMHCLPAHRDDEATSAVMDGPHSVIFDEAENRLHAQKA 300

Query: 296 VLAWCLG 302
           ++ WCLG
Sbjct: 301 IMRWCLG 307


Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 346
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 308
Length adjustment: 27
Effective length of query: 276
Effective length of database: 281
Effective search space:    77556
Effective search space used:    77556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_002719162.1 RSPH17029_RS03670 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.12745.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.12745.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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