Align ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate WP_002719162.1 RSPH17029_RS03670 ornithine carbamoyltransferase
Query= BRENDA::Q98BB6 (303 letters) >NCBI__GCF_000015985.1:WP_002719162.1 Length = 308 Score = 358 bits (919), Expect = e-104 Identities = 176/307 (57%), Positives = 220/307 (71%), Gaps = 7/307 (2%) Query: 3 VRHFTDLSTVSEGDLRFMLDDAVVRKARLKAG-----ERTRPLEGKVLAMIFDKPSTRTR 57 + HF D+ +LR M+D A KA K + +PL G+++A+IF+KPSTRTR Sbjct: 1 MNHFLDIHKTDTAELRQMMDSAHAMKAARKGRPKGQLDEDQPLAGRMVALIFEKPSTRTR 60 Query: 58 VSFDVGMRQLGGETIMLTGTEMQLGRSETIADTAKVLSRYVDAIMIRTTSHDRLLELTEN 117 VSFDVG+RQ+GG+T++L+G EMQLG ETIADTA+VLSRYVD IMIRT LLE+ E+ Sbjct: 61 VSFDVGVRQMGGQTMVLSGKEMQLGHGETIADTARVLSRYVDLIMIRTFEEATLLEMAEH 120 Query: 118 ATVPVINGLTDDTHPCQLMADIMTFEEHRGPVAGKTIAWTGDGNNVLHSLLEASARFRFN 177 ATVPVINGLT+ THPCQ+MAD+MT+EEHRGP+AG+ + W GDGNNV S L A+ +F F+ Sbjct: 121 ATVPVINGLTNRTHPCQIMADVMTYEEHRGPIAGRKVVWAGDGNNVCASFLHAAGQFGFD 180 Query: 178 LNVAVPEGSEPAQKHIDWSKAHGGKLHFTRSPEEAVDQADCVVTDCWVSM--GQEHRARG 235 P +P + + +++ G ++ R P +AV AD VVTD WVSM Q R R Sbjct: 181 FTFTGPSTLDPEAEFVGYAREKGRRVSIERDPAKAVAGADLVVTDTWVSMHDPQSARERR 240 Query: 236 HNVFSPYQVNAKLMAHAKPDALFMHCLPAHRGEEVTDEVIDGPHSVVFDEAENRLHAQKA 295 HN PYQVN LMA AKPDALFMHCLPAHR +E T V+DGPHSV+FDEAENRLHAQKA Sbjct: 241 HNQLRPYQVNEALMAQAKPDALFMHCLPAHRDDEATSAVMDGPHSVIFDEAENRLHAQKA 300 Query: 296 VLAWCLG 302 ++ WCLG Sbjct: 301 IMRWCLG 307 Lambda K H 0.320 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 346 Number of extensions: 12 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 303 Length of database: 308 Length adjustment: 27 Effective length of query: 276 Effective length of database: 281 Effective search space: 77556 Effective search space used: 77556 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate WP_002719162.1 RSPH17029_RS03670 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))
../bin/blast/fastacmd -i /tmp/list.25174.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.25174.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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