Alignments for a candidate for hisH in Cereibacter sphaeroides ATCC 17029

Align imidazole glycerol-phosphate synthase (subunit 1/2) (EC 4.3.2.10) (characterized)
to candidate WP_002719405.1 RSPH17029_RS04685 imidazole glycerol phosphate synthase subunit HisH

Query= BRENDA::Q5NMD4
         (213 letters)



>NCBI__GCF_000015985.1:WP_002719405.1
          Length = 212

 Score =  188 bits (477), Expect = 7e-53
 Identities = 97/210 (46%), Positives = 133/210 (63%), Gaps = 9/210 (4%)

Query: 11  LIDYGAGNLRSVANAL--LASGLARENLVVTANPDEVLQADRVVLPGVGAFASCMQALKA 68
           L+DY +GNL S   A   +A+      ++V+  P++V +ADR+VLPG GAF +C +AL +
Sbjct: 5   LVDYDSGNLHSAEKAFQRMATETGAGQVLVSDKPEDVARADRIVLPGDGAFPACRRALGS 64

Query: 69  IPDMVPALEKAVLEKGRPFLGICVGMQLLADQGEEYGVHQGLGWIKGKVTPLRPNDPSCK 128
              +  A+E+AV  + RPFLGIC+GMQ++A +G E+    G GWI G+V  + P DP  K
Sbjct: 65  YGGLSEAIEEAVTRRARPFLGICIGMQMMATRGLEHEETPGFGWIAGEVVRIAPADPHLK 124

Query: 129 VPHMGWNQIGLTTD-SHPLLRAGE----AYFLHSYAFVPEDESTLLATTEHGGLVTAAVG 183
           VPHMGWN   LT D  HP+L   E    AYF+HSY F    ++  LA  ++G  +TA VG
Sbjct: 125 VPHMGWND--LTVDHPHPVLAGIETGDHAYFVHSYHFQVAHDAERLAHADYGAAITAIVG 182

Query: 184 RDNIMGVQFHPEKSQSYGLEFLSRFLDWNP 213
           RD ++G QFHPEKSQ  GL  ++ FL W P
Sbjct: 183 RDTMVGTQFHPEKSQKTGLRLIANFLTWKP 212


Lambda     K      H
   0.318    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 171
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 212
Length adjustment: 21
Effective length of query: 192
Effective length of database: 191
Effective search space:    36672
Effective search space used:    36672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate WP_002719405.1 RSPH17029_RS04685 (imidazole glycerol phosphate synthase subunit HisH)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.1271.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.1271.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.