Align Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Asp/Glu-ADT subunit C; EC 6.3.5.- (uncharacterized)
to candidate WP_002719430.1 RSPH17029_RS04810 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC
Query= curated2:A8LJ24
(95 letters)
>NCBI__GCF_000015985.1:WP_002719430.1
Length = 95
Score = 150 bits (378), Expect = 4e-42
Identities = 77/95 (81%), Positives = 85/95 (89%)
Query: 1 MSIDIETARRVAKLARIKVEDDALPALAGEFNHILGFIEQLNEVDVDDVEPMTSVTPMRL 60
MSIDIETARRVA LARI+V++ LPALAGE + IL F+EQLNEVDV+ +EPMTSVTPMRL
Sbjct: 1 MSIDIETARRVAHLARIRVDEADLPALAGELSGILTFMEQLNEVDVEGIEPMTSVTPMRL 60
Query: 61 KRREDVVTDGDQQAAVLSNAPDAREGFFAVPKVVE 95
KRR+DVVTDGD Q VLSNAPDAREGFFAVPKVVE
Sbjct: 61 KRRQDVVTDGDMQDKVLSNAPDAREGFFAVPKVVE 95
Lambda K H
0.317 0.135 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 95
Length of database: 95
Length adjustment: 10
Effective length of query: 85
Effective length of database: 85
Effective search space: 7225
Effective search space used: 7225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.8 bits)
S2: 39 (19.6 bits)
Align candidate WP_002719430.1 RSPH17029_RS04810 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC)
to HMM TIGR00135 (gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.16197.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.16197.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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