Alignments for a candidate for prs in Cereibacter sphaeroides ATCC 17029

Align ribose-phosphate diphosphokinase (EC 2.7.6.1) (characterized)
to candidate WP_002719464.1 RSPH17029_RS04980 ribose-phosphate pyrophosphokinase

Query= BRENDA::P0A719
         (315 letters)



>NCBI__GCF_000015985.1:WP_002719464.1
          Length = 339

 Score =  306 bits (785), Expect = 3e-88
 Identities = 164/323 (50%), Positives = 223/323 (69%), Gaps = 11/323 (3%)

Query: 1   MPDMKLFAGNATPELAQRIANRLYT------SLGDAAVGRFSDGEVSVQINENVRGGDIF 54
           M + KL +GNA   LA+ IA R+        SL DA V RF+D E+ V++ ENVRG D++
Sbjct: 4   MNEPKLISGNANLTLAKSIARRMSVHRGMAVSLVDARVERFNDQEIFVEVYENVRGEDMY 63

Query: 55  IIQSTCAPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVA 114
           +IQ T  P NDNLMEL+++ DALRR+SA RITAVIPYFGYARQDRR + AR PI+AK+VA
Sbjct: 64  VIQPTSNPANDNLMELLIIADALRRSSADRITAVIPYFGYARQDRRAK-ARTPISAKLVA 122

Query: 115 DFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPIL---LEDMLQLNLDNPIVVSPDI 171
           + +   G+DRVLT+DLHA QIQGFFD+PVDN++ +P+    +E   +  L + +VVSPD+
Sbjct: 123 NLIVEAGIDRVLTLDLHAAQIQGFFDIPVDNLYSAPVFALDIEHHFKGQLQDLMVVSPDV 182

Query: 172 GGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVLVDDMIDTGGTLCK 231
           GGV RAR IAK +N   +AI+DKRR +      M +IG+VAG+ C++VDD+ DT GTLCK
Sbjct: 183 GGVARAREIAKRIN-APLAIVDKRREKPGEIAEMTVIGNVAGKKCIIVDDICDTAGTLCK 241

Query: 232 AAEALKERGAKRVFAYATHPIFSGNAANNLRNSVIDEVVVCDTIPLSDEIKSLPNVRTLT 291
           AAE L E GA  V +Y TH + SG A   +  SV+  +V+ D+I  S  ++  PN+R + 
Sbjct: 242 AAEVLIENGAVEVHSYITHGVLSGPAVERVTKSVMKSLVITDSIEPSAAVRGAPNIRIVP 301

Query: 292 LSGMLAEAIRRISNEESISAMFE 314
            + M A+AI  I +  S+S++FE
Sbjct: 302 TAPMFAQAILNIWSGTSVSSLFE 324


Lambda     K      H
   0.321    0.137    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 283
Number of extensions: 12
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 339
Length adjustment: 28
Effective length of query: 287
Effective length of database: 311
Effective search space:    89257
Effective search space used:    89257
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate WP_002719464.1 RSPH17029_RS04980 (ribose-phosphate pyrophosphokinase)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.17207.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.17207.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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