Align 3-dehydroquinate synthase (EC 4.2.3.4) (characterized)
to candidate WP_002719990.1 RSPH17029_RS07475 3-dehydroquinate synthase
Query= BRENDA::P07639 (362 letters) >NCBI__GCF_000015985.1:WP_002719990.1 Length = 370 Score = 278 bits (710), Expect = 2e-79 Identities = 163/364 (44%), Positives = 223/364 (61%), Gaps = 7/364 (1%) Query: 1 MERIVVTLGERSYPITIASGLFNEP-ASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQ 59 ++ + V LG R+Y + I GL A PL +V ++T+ET+A L+LD R L + Sbjct: 3 VDAVRVELGARAYEVRIGPGLIARAGAEIAPLLRRPKVAILTDETVAGLHLDPFRQALAE 62 Query: 60 AGVNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQ 119 AG+ ++ LP GE K LL++ R +VALGGGV+GDL GFAAA + Sbjct: 63 AGIASSALALPAGEATKGWPQFARAVEWLLEEKVERRDVVVALGGGVIGDLAGFAAAVLR 122 Query: 120 RGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELA 179 RGVRF+QVPTTLL+QVDSSVGGKT +N GKN++GAF+QP+ V+ D+ L+TLPPR+ Sbjct: 123 RGVRFVQVPTTLLAQVDSSVGGKTGINTAQGKNLVGAFHQPSLVLADIGVLETLPPRDFR 182 Query: 180 SGLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEVVAADERETGL 239 +G EV+KYG++ D F+ WLEE L D A +RR E+KAE+VA DE E G Sbjct: 183 AGYGEVVKYGLLGDADFYEWLEE-AGPRLAADTEARQRAVRRSVEMKAEIVARDETEEGD 241 Query: 240 RALLNLGHTFGHAIEAEMGYGN-WLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLLK 298 RALLNLGHTF HA+E GY + LHGE VA G +A S+RLG + R+ L+ Sbjct: 242 RALLNLGHTFCHALEKATGYSDRLLHGEGVAIGCALAFELSQRLGLCAQEAPSRLRAHLR 301 Query: 299 RAGLPV---NGPREM-SAQAYLPHMLRDKKVLAGEMRLILPLAIGKSEVRSGVSHELVLN 354 G+ V + P ++ SA+A L M +DKKV+ G++R IL IG++ V V ++V Sbjct: 302 AMGMKVDLRDIPGDLPSAEALLALMAQDKKVVDGKLRFILARGIGQAFVADDVPGDVVRT 361 Query: 355 AIAD 358 + D Sbjct: 362 LLED 365 Lambda K H 0.320 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 287 Number of extensions: 7 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 362 Length of database: 370 Length adjustment: 30 Effective length of query: 332 Effective length of database: 340 Effective search space: 112880 Effective search space used: 112880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate WP_002719990.1 RSPH17029_RS07475 (3-dehydroquinate synthase)
to HMM TIGR01357 (aroB: 3-dehydroquinate synthase (EC 4.2.3.4))
../bin/blast/fastacmd -i /tmp/list.14772.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.14772.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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