Alignments for a candidate for aroB in Cereibacter sphaeroides ATCC 17029

Align 3-dehydroquinate synthase (EC 4.2.3.4) (characterized)
to candidate WP_002719990.1 RSPH17029_RS07475 3-dehydroquinate synthase

Query= BRENDA::P07639
         (362 letters)



>NCBI__GCF_000015985.1:WP_002719990.1
          Length = 370

 Score =  278 bits (710), Expect = 2e-79
 Identities = 163/364 (44%), Positives = 223/364 (61%), Gaps = 7/364 (1%)

Query: 1   MERIVVTLGERSYPITIASGLFNEP-ASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQ 59
           ++ + V LG R+Y + I  GL     A   PL    +V ++T+ET+A L+LD  R  L +
Sbjct: 3   VDAVRVELGARAYEVRIGPGLIARAGAEIAPLLRRPKVAILTDETVAGLHLDPFRQALAE 62

Query: 60  AGVNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQ 119
           AG+   ++ LP GE  K           LL++   R   +VALGGGV+GDL GFAAA  +
Sbjct: 63  AGIASSALALPAGEATKGWPQFARAVEWLLEEKVERRDVVVALGGGVIGDLAGFAAAVLR 122

Query: 120 RGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELA 179
           RGVRF+QVPTTLL+QVDSSVGGKT +N   GKN++GAF+QP+ V+ D+  L+TLPPR+  
Sbjct: 123 RGVRFVQVPTTLLAQVDSSVGGKTGINTAQGKNLVGAFHQPSLVLADIGVLETLPPRDFR 182

Query: 180 SGLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEVVAADERETGL 239
           +G  EV+KYG++ D  F+ WLEE     L  D  A    +RR  E+KAE+VA DE E G 
Sbjct: 183 AGYGEVVKYGLLGDADFYEWLEE-AGPRLAADTEARQRAVRRSVEMKAEIVARDETEEGD 241

Query: 240 RALLNLGHTFGHAIEAEMGYGN-WLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLLK 298
           RALLNLGHTF HA+E   GY +  LHGE VA G  +A   S+RLG  +     R+   L+
Sbjct: 242 RALLNLGHTFCHALEKATGYSDRLLHGEGVAIGCALAFELSQRLGLCAQEAPSRLRAHLR 301

Query: 299 RAGLPV---NGPREM-SAQAYLPHMLRDKKVLAGEMRLILPLAIGKSEVRSGVSHELVLN 354
             G+ V   + P ++ SA+A L  M +DKKV+ G++R IL   IG++ V   V  ++V  
Sbjct: 302 AMGMKVDLRDIPGDLPSAEALLALMAQDKKVVDGKLRFILARGIGQAFVADDVPGDVVRT 361

Query: 355 AIAD 358
            + D
Sbjct: 362 LLED 365


Lambda     K      H
   0.320    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 287
Number of extensions: 7
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 370
Length adjustment: 30
Effective length of query: 332
Effective length of database: 340
Effective search space:   112880
Effective search space used:   112880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_002719990.1 RSPH17029_RS07475 (3-dehydroquinate synthase)
to HMM TIGR01357 (aroB: 3-dehydroquinate synthase (EC 4.2.3.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.14772.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.14772.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.