Alignments for a candidate for leuB in Cereibacter sphaeroides ATCC 17029

Align 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (characterized)
to candidate WP_002721052.1 RSPH17029_RS12705 3-isopropylmalate dehydrogenase

Query= BRENDA::P24404
         (370 letters)



>NCBI__GCF_000015985.1:WP_002721052.1
          Length = 369

 Score =  435 bits (1118), Expect = e-126
 Identities = 228/364 (62%), Positives = 273/364 (75%), Gaps = 2/364 (0%)

Query: 5   SLFLLPGDGIGPEAMTEVRKLIEYMNSAHNAGFTVSEGLVGGSAYDAHGVAISDADMEKA 64
           SL +L GDGIGPE M EV+++I +        F VSE LVGG+AYDAHG  ++D  M +A
Sbjct: 5   SLLILAGDGIGPEVMAEVKRIIGWFGEKRGVTFDVSEDLVGGAAYDAHGTPLADETMARA 64

Query: 65  LAADAILFGAVGGPKWDGVPYEHRPEAGLLRLRKDLELFANLRPAICYPALAAASSLKPE 124
              DA+L GAVGGPK+D + +  +PE GLLRLRK+++L+ANLRPA C+ ALA  SSLK +
Sbjct: 65  QEVDAVLLGAVGGPKYDVLDFSVKPERGLLRLRKEMDLYANLRPAQCFDALADFSSLKRD 124

Query: 125 LVEGLDILIVRELTGGVYFGEPKQIIDLGNGQKRGIDTQIYDTFEIERIASVAFELARSR 184
           +V GLDI+IVRELT GVYFGEP+ I     G + G++TQ Y T EI R+A  AFELAR R
Sbjct: 125 IVAGLDIMIVRELTSGVYFGEPRGIFPDNEGGRFGVNTQRYTTEEIRRVARSAFELARRR 184

Query: 185 DNRVCSMEKRNVMKSGVLWNQVVTETHAAKYKDVQLEHMLADAGGMQLVRKPKQFDVIVT 244
           +NRVCSMEK NVM+SG+LW + V   H  +Y DV+L HM AD G MQLVR P+QFDVIVT
Sbjct: 185 NNRVCSMEKANVMESGILWREEVQWVHDNEYPDVELSHMYADNGAMQLVRWPRQFDVIVT 244

Query: 245 DNLFGDMLSDVAAMLTGSLGMLPSASLGAPDAKTGKRKAMYEPVHGSAPDIAGKSIANPI 304
           DNLFGD+LSD AAMLTGSLGMLPSASLGAP A  G+ KA+YEPVHGSAPDIAG+  ANPI
Sbjct: 245 DNLFGDILSDCAAMLTGSLGMLPSASLGAPMA-NGRPKALYEPVHGSAPDIAGQGKANPI 303

Query: 305 AMIASFAMCLRYSFNMVDEATKLEAAIANVLDKGIRTADIMA-DGCRQVGTSDMGDAVLA 363
           A I SFAM LRYSF+M +EAT+LE A+  VL  G+RTAD+M  +G   V TS MGDAVLA
Sbjct: 304 ACILSFAMALRYSFDMGEEATRLEKAVETVLADGVRTADLMGPEGGTPVSTSGMGDAVLA 363

Query: 364 EFKA 367
              A
Sbjct: 364 ALDA 367


Lambda     K      H
   0.319    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 480
Number of extensions: 15
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 369
Length adjustment: 30
Effective length of query: 340
Effective length of database: 339
Effective search space:   115260
Effective search space used:   115260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_002721052.1 RSPH17029_RS12705 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))

Software error:

../bin/blast/fastacmd -i /tmp/list.30714.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.30714.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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