Alignments for a candidate for fba in Cereibacter sphaeroides ATCC 17029

Align fructose-bisphosphate aldolase (EC 4.1.2.13) (characterized)
to candidate WP_002721830.1 RSPH17029_RS14840 fructose-bisphosphate aldolase class II

Query= BRENDA::Q55664
         (359 letters)



>NCBI__GCF_000015985.1:WP_002721830.1
          Length = 359

 Score =  474 bits (1219), Expect = e-138
 Identities = 234/358 (65%), Positives = 284/358 (79%)

Query: 1   MALVPMRLLLDHAAENGYGIPAFNVNNMEQIISIMQAADETDSPVILQASRGARSYAGEN 60
           MAL+ +R LLDHAAE GYG+PAFN+NNMEQ ++I+ AA   D+PVILQASRGARSYAG+ 
Sbjct: 1   MALITLRQLLDHAAERGYGVPAFNINNMEQGLAILAAARACDAPVILQASRGARSYAGDI 60

Query: 61  FLRHLVLGAVETYPHIPIAMHQDHGNSPATCYSAIRNGFTSVMMDGSLEADAKTPASFEY 120
            LRH+V    E YP IPI +HQDHGN+ ATC SAIR+GFTSVMMDGSL+AD KT AS++Y
Sbjct: 61  MLRHIVEALAEMYPQIPICLHQDHGNNEATCLSAIRHGFTSVMMDGSLQADMKTVASYDY 120

Query: 121 NVNVTAEVVKVAHSVGASVEGELGCLGSLETGQGEAEDGHGFEGKLDHSQLLTDPEEAVE 180
           NV++T  V   AH VGASVEGELG LGSLE G+ EAEDG G EGKLDHSQ+LTDP++AVE
Sbjct: 121 NVDITRRVTDAAHWVGASVEGELGVLGSLEKGEAEAEDGSGAEGKLDHSQMLTDPDQAVE 180

Query: 181 FVNKTQVDALAVAIGTSHGAYKFTRKPTGEVLAISRIEEIHRLLPNTHLVMHGSSSVPQE 240
           FV  T+VDALA+A+GTSHGAYKF+RKP GE+LA+  IEEIH  LP THLVMHGSSSVPQ 
Sbjct: 181 FVQATRVDALAIAMGTSHGAYKFSRKPDGEILAMRVIEEIHARLPATHLVMHGSSSVPQA 240

Query: 241 WIDMINEFGGAIPETYGVPVEEIQKGIKSGVRKVNIDTDNRLAITAAFREAAAKDPKNFD 300
             D+IN  GG +P+TYGVPVEEI++GI+ GVRKVNIDTD R+A+T  FR+ A + PK FD
Sbjct: 241 LQDLINAHGGEMPQTYGVPVEEIERGIRHGVRKVNIDTDCRMALTGQFRKVAMESPKEFD 300

Query: 301 PRHFLKPSIKYMKQVCADRYQQFWTAGNASKIKQLTLDDYAAKYAKGELTATSRTSVA 358
           PR F+ P++K M+ +  DR+++F TAGNASKI  + +DD A +YA G L     T+ A
Sbjct: 301 PRKFMIPAMKEMEALVRDRFERFGTAGNASKITVIPMDDMAKRYASGALDPAVATAKA 358


Lambda     K      H
   0.315    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 485
Number of extensions: 11
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 359
Length adjustment: 29
Effective length of query: 330
Effective length of database: 330
Effective search space:   108900
Effective search space used:   108900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_002721830.1 RSPH17029_RS14840 (fructose-bisphosphate aldolase class II)
to HMM TIGR01521 (fba: fructose-bisphosphate aldolase, class II, Calvin cycle subtype (EC 4.1.2.13))

Software error:

../bin/blast/fastacmd -i /tmp/list.19553.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.19553.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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