Alignments for a candidate for leuB in Rhizobium johnstonii 3841

Align 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (characterized)
to candidate WP_003543987.1 RL_RS24220 3-isopropylmalate dehydrogenase

Query= BRENDA::P24404
         (370 letters)



>NCBI__GCF_000009265.1:WP_003543987.1
          Length = 370

 Score =  654 bits (1686), Expect = 0.0
 Identities = 327/370 (88%), Positives = 344/370 (92%)

Query: 1   MTVRSLFLLPGDGIGPEAMTEVRKLIEYMNSAHNAGFTVSEGLVGGSAYDAHGVAISDAD 60
           MT R+LFLLPGDGIGPEAM EVRK+I YMN A NAGF   EGLVGG AYDAHG AIS+AD
Sbjct: 1   MTARNLFLLPGDGIGPEAMGEVRKIIAYMNEAMNAGFVTDEGLVGGCAYDAHGAAISEAD 60

Query: 61  MEKALAADAILFGAVGGPKWDGVPYEHRPEAGLLRLRKDLELFANLRPAICYPALAAASS 120
           M+KALAADA+LFGAVGGPKWD VPYE RPEAGLLRLRKDL+LFANLRPAICYPALAAASS
Sbjct: 61  MQKALAADAVLFGAVGGPKWDSVPYEVRPEAGLLRLRKDLQLFANLRPAICYPALAAASS 120

Query: 121 LKPELVEGLDILIVRELTGGVYFGEPKQIIDLGNGQKRGIDTQIYDTFEIERIASVAFEL 180
           LKPELVEGLDILI+RELTGGVYFGEPK+IIDLGNGQKRGIDTQ+YDT+EIERIA VAFE+
Sbjct: 121 LKPELVEGLDILIIRELTGGVYFGEPKEIIDLGNGQKRGIDTQVYDTYEIERIAGVAFEM 180

Query: 181 ARSRDNRVCSMEKRNVMKSGVLWNQVVTETHAAKYKDVQLEHMLADAGGMQLVRKPKQFD 240
           AR+R NRVCSMEKRNVMKSGVLWNQVVTETH AKY DVQLEHMLADAGGMQLVR+PKQFD
Sbjct: 181 ARTRQNRVCSMEKRNVMKSGVLWNQVVTETHKAKYSDVQLEHMLADAGGMQLVRQPKQFD 240

Query: 241 VIVTDNLFGDMLSDVAAMLTGSLGMLPSASLGAPDAKTGKRKAMYEPVHGSAPDIAGKSI 300
           VIVTDNLFGDMLSDVAAMLTGSLGMLPSASLGAPD KTGKRKA+YEPVHGSAPDIAGK I
Sbjct: 241 VIVTDNLFGDMLSDVAAMLTGSLGMLPSASLGAPDGKTGKRKALYEPVHGSAPDIAGKGI 300

Query: 301 ANPIAMIASFAMCLRYSFNMVDEATKLEAAIANVLDKGIRTADIMADGCRQVGTSDMGDA 360
           ANPIAMIASFAMCLRYSFN+V EA  LE AIANVLDKGIRT DIMADG RQVGT +MGDA
Sbjct: 301 ANPIAMIASFAMCLRYSFNLVKEADDLEKAIANVLDKGIRTGDIMADGARQVGTVEMGDA 360

Query: 361 VLAEFKALSA 370
           +LAEFK LSA
Sbjct: 361 ILAEFKTLSA 370


Lambda     K      H
   0.319    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 604
Number of extensions: 14
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 370
Length adjustment: 30
Effective length of query: 340
Effective length of database: 340
Effective search space:   115600
Effective search space used:   115600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_003543987.1 RL_RS24220 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))

Software error:

../bin/blast/fastacmd -i /tmp/list.22316.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22316.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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