Align Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Asp/Glu-ADT subunit C; EC 6.3.5.- (uncharacterized)
to candidate WP_003558942.1 RLEG_RS08485 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC
Query= curated2:Q6G3F0
(95 letters)
>NCBI__GCF_000023185.1:WP_003558942.1
Length = 95
Score = 125 bits (313), Expect = 2e-34
Identities = 66/95 (69%), Positives = 73/95 (76%)
Query: 1 MSVDQETVKRVSHLARIALHNDEVELMTKELNVILGFVEQLSEVDVSGVEPLTSVMPMTL 60
MSVD TVKRV+ LARIA+ DE M ELN ILGFVEQLSEV+V GVE +TSV PM +
Sbjct: 1 MSVDLATVKRVARLARIAVSEDEANRMVGELNGILGFVEQLSEVNVDGVEAMTSVTPMAM 60
Query: 61 RMREDSVTDGDKVADIVANAPVTEENFFLVSKVVE 95
+ R D VTDG K ADIVANAPVT+ NFFLV KVVE
Sbjct: 61 KKRTDEVTDGSKAADIVANAPVTDHNFFLVPKVVE 95
Lambda K H
0.315 0.130 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 95
Length of database: 95
Length adjustment: 10
Effective length of query: 85
Effective length of database: 85
Effective search space: 7225
Effective search space used: 7225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.6 bits)
S2: 39 (19.6 bits)
Align candidate WP_003558942.1 RLEG_RS08485 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC)
to HMM TIGR00135 (gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.1556.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1556.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.