Alignments for a candidate for argE in Rhizobium leguminosarum WSM1325

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate WP_003562887.1 RLEG_RS24935 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>NCBI__GCF_000023185.1:WP_003562887.1
          Length = 373

 Score =  604 bits (1557), Expect = e-177
 Identities = 299/372 (80%), Positives = 325/372 (87%)

Query: 1   MQAAEILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKE 60
           MQA EIL +LVGF SVVG PN ++V+WIR YL+SHG  V  LPGPEGDRSN+FATIGPKE
Sbjct: 1   MQAIEILERLVGFPSVVGTPNGEIVAWIRHYLQSHGAVVTELPGPEGDRSNLFATIGPKE 60

Query: 61  ARGYIISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMP 120
             GYI+SGHMDVVPAA  GWTSDPFRLR EAD LYGRG TDMKGFLAAVLAAVP L A P
Sbjct: 61  TPGYILSGHMDVVPAAGGGWTSDPFRLRAEADILYGRGATDMKGFLAAVLAAVPALVASP 120

Query: 121 LRRPLHLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLT 180
           LR+P+HLA SYDEEAGCRGVPHMIARLPELC  PLGAIIGEP+GMRAIRAHKGKAAARLT
Sbjct: 121 LRQPVHLAFSYDEEAGCRGVPHMIARLPELCATPLGAIIGEPSGMRAIRAHKGKAAARLT 180

Query: 181 VRGRSGHSSRPDQGLNAIHGVAGVLTQAVAEADRLVGGPFEHVFEPPYSSLQIGTVKGGQ 240
           VRGRSGHSSRPDQGLNAIH +  +L  A AEA+RL  GP+E VFEPPYSSLQ+GT+KGGQ
Sbjct: 181 VRGRSGHSSRPDQGLNAIHAITDILACARAEAERLTRGPYEPVFEPPYSSLQVGTLKGGQ 240

Query: 241 AVNIIPDSCEVEFEARAISGVDPAELLAPVRKTAEALTTLGFEVEWQELSAYPALSLEPD 300
           AVNIIPDSCE EFEARAISGVDP  LLAP+R +AE L+ LGF+++W+ELSAYPALSL  D
Sbjct: 241 AVNIIPDSCEAEFEARAISGVDPITLLAPLRASAEGLSQLGFQIDWRELSAYPALSLAAD 300

Query: 301 APLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGRAHKPDEYILIDELMA 360
           APLAALL ELTG E L AVSYGTEAGLFQRAGIDAIICGPGDIGRAHKPDE+IL  EL+A
Sbjct: 301 APLAALLSELTGIEPLAAVSYGTEAGLFQRAGIDAIICGPGDIGRAHKPDEFILTGELLA 360

Query: 361 CRAMVEALGARC 372
           C+AMVEALG RC
Sbjct: 361 CQAMVEALGRRC 372


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 517
Number of extensions: 13
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 373
Length adjustment: 30
Effective length of query: 344
Effective length of database: 343
Effective search space:   117992
Effective search space used:   117992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_003562887.1 RLEG_RS24935 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.9353.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9353.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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