Alignments for a candidate for ilvD in Haloferax volcanii DS2

Align Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 (characterized)
to candidate WP_004042767.1 C498_RS08250 dihydroxy-acid dehydratase

Query= SwissProt::P9WKJ5
         (575 letters)



>NCBI__GCF_000337315.1:WP_004042767.1
          Length = 584

 Score =  561 bits (1446), Expect = e-164
 Identities = 295/575 (51%), Positives = 391/575 (68%), Gaps = 8/575 (1%)

Query: 2   PQTTDEAASVSTVADIKPRSRDVTDGLEKAAARGMLRAVGMDDEDFAKPQIGVASSWNEI 61
           P+  D     S+  D   RS +VT+G +KA  R M RA+G DDEDF+ P +GV +   +I
Sbjct: 6   PREEDPDDVFSSGKDPNLRSTEVTEGPDKAPHRAMFRAMGFDDEDFSSPMVGVPNPAADI 65

Query: 62  TPCNLSLDRLANAVKEGVFSAGGYPLEFGTISVSDGISMGHEGMHFSLVSREVIADSVEV 121
           TPCN+ LD +A+A  EG+ +AGG P+EFGT+++SD ISMG EGM  SL+SREVIADSVE+
Sbjct: 66  TPCNVHLDDVADAAIEGIDAAGGMPIEFGTVTISDAISMGTEGMKASLISREVIADSVEL 125

Query: 122 VMQAERLDGSVLLAGCDKSLPGMLMAAARLDLAAVFLYAGSILPGRAKLSDGSERDVTII 181
           V   ER+D  V +AGCDK+LPGM+MAA R DL +VFLY GSI+PG+ +      R+VT+ 
Sbjct: 126 VSFGERMDALVTVAGCDKNLPGMMMAAIRTDLPSVFLYGGSIMPGQHE-----GREVTVQ 180

Query: 182 DAFEAVGACSRGLMSRADVDAIERAICPGEGACGGMYTANTMASAAEALGMSLPGSAAPP 241
           + FE VG  + G MS  ++D +ER  CPG G+CGGM+TANTMAS +EALGM+  GSA+ P
Sbjct: 181 NVFEGVGTYAEGDMSADELDDLERHACPGAGSCGGMFTANTMASISEALGMAPLGSASAP 240

Query: 242 ATDRRRDGFARRSGQAVVELLRRGITARDILTKEAFENAIAVVMAFGGSTNAVLHLLAIA 301
           A    R   ARR+G+ V++ +       DILTK++FENAI + +A GGSTNAVLHLLA+A
Sbjct: 241 AESDERYENARRAGEVVLDCVENDRRPSDILTKKSFENAITLQVATGGSTNAVLHLLALA 300

Query: 302 HEANVALSLQDFSRIGSGVPHLADVKPFGRHVMSDVDHIGGVPVVMKALLDAGLLHGDCL 361
            EA V L +++F+ I    P +A+++P G  VM+D+  IGG+PVV++ L++AGL HGD +
Sbjct: 301 AEAGVDLDIEEFNEISRRTPKIANLQPGGTRVMNDLHEIGGIPVVIRRLVEAGLFHGDAM 360

Query: 362 TVTGHTMAENLAAITPPDPDG---KVLRALANPIHPSGGITILHGSLAPEGAVVKTAGFD 418
           TVTG T+AE L  +  PD DG     L  +  P    G I IL G+LAP+GAV+K  G D
Sbjct: 361 TVTGRTIAEELDHLDLPDDDGLEADFLYTVDEPYQDEGAIKILTGNLAPDGAVLKVTGDD 420

Query: 419 SDVFEGTARVFDGERAALDALEDGTITVGDAVVIRYEGPKGGPGMREMLAITGAIKGAGL 478
           +    G ARVF+ E  A+  +++G I  GD + IR EGP+GGPGMREML +T A+ G G 
Sbjct: 421 AFHHTGPARVFENEEDAMRYVQEGHIEEGDVIAIRNEGPRGGPGMREMLGVTAAVVGQGH 480

Query: 479 GKDVLLLTDGRFSGGTTGLCVGHIAPEAVDGGPIALLRNGDRIRLDVAGRVLDVLADPAE 538
             DV LLTDGRFSG T G  VGH+APEA +GGPI LL +GD + +D+  R L V     E
Sbjct: 481 EDDVALLTDGRFSGATRGPMVGHVAPEAAEGGPIGLLEDGDEVTVDIPNRELSVDLSDEE 540

Query: 539 FASRQQDFSPPPPRYTTGVLSKYVKLVSSAAVGAV 573
             +R++D+ P PP YT+GVL+KY +   SAA GAV
Sbjct: 541 LEARKEDWEPKPPAYTSGVLAKYARDFGSAANGAV 575


Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1066
Number of extensions: 54
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 584
Length adjustment: 36
Effective length of query: 539
Effective length of database: 548
Effective search space:   295372
Effective search space used:   295372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate WP_004042767.1 C498_RS08250 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.30881.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30881.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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