Alignments for a candidate for argI in Haloferax volcanii DS2

Align ArgF (EC 2.1.3.3) (characterized)
to candidate WP_004045044.1 C498_RS17865 ornithine carbamoyltransferase

Query= metacyc::ARGFBACSU-MONOMER
         (319 letters)



>NCBI__GCF_000337315.1:WP_004045044.1
          Length = 299

 Score =  290 bits (742), Expect = 3e-83
 Identities = 147/294 (50%), Positives = 200/294 (68%), Gaps = 6/294 (2%)

Query: 17  LKDLSEEDINALLAEAGELKQNKIQPIFHGKTLAMIFEKSSTRTRVSFEAGMAQLGGSAL 76
           + D+S  +++ +L  A ++K    +      TLAM+FEK STRTRVSFE GM +LGG AL
Sbjct: 10  IDDISASELDRVLTRAADIKSGDDETQLTRATLAMLFEKPSTRTRVSFETGMTELGGHAL 69

Query: 77  FLSQKDLQLGRGETVADTAKVLSGYVDAIMIRTFEHEKVEELAKEADIPVINGLTDKYHP 136
           FL  +D+QLG GE ++DTA+VL  Y DAIM+R F+HE + E+A+ +D PVINGLTD  HP
Sbjct: 70  FLGPEDIQLGHGEPLSDTARVLGRYGDAIMVRLFDHEDLLEIAEHSDAPVINGLTDDAHP 129

Query: 137 CQALADLLTIKEIKGKLKGVKVAYIGDGNNVAHSLMIGCAKMGCDISIASPKGYEVLDEA 196
           CQ LADLLTI+E  G    V+ A++GDGNNV  S ++GCA  G D+++A+P  Y V D+ 
Sbjct: 130 CQTLADLLTIREHVGDFDEVQAAWVGDGNNVGQSFVLGCAMAGIDLTVATPPAYGVDDDV 189

Query: 197 AEAAKTYALQSGSSVTLTDDPIEAVKDADVIYSDVFTSMGQEAEEQERLAVFAPYQVNAA 256
            E     A + GS+ T+T DP EAV DADV+Y+DV+ SMGQE +  E+L  F  +Q+N  
Sbjct: 190 LEK----AAELGSTPTITTDPEEAVADADVVYTDVWISMGQEDQRHEKLQAFEGFQLNED 245

Query: 257 LVSHAKPDYTFLHCLPAHREEEVTAEIIDGPNSAVFQQAENRLHVQKALLKAIL 310
           L+S    D   +HCLPAHR EE+T ++++   S V+ QAENRLH QK L+  +L
Sbjct: 246 LLS--STDAKVMHCLPAHRGEEITGDVLEDERSLVWDQAENRLHAQKGLIVELL 297


Lambda     K      H
   0.315    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 284
Number of extensions: 15
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 299
Length adjustment: 27
Effective length of query: 292
Effective length of database: 272
Effective search space:    79424
Effective search space used:    79424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 48 (23.1 bits)

Align candidate WP_004045044.1 C498_RS17865 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.23824.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23824.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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