Alignments for a candidate for serC in Thauera aminoaromatica S2

Align phosphoserine transaminase (EC 2.6.1.52) (characterized)
to candidate WP_004299033.1 C665_RS02130 3-phosphoserine/phosphohydroxythreonine transaminase

Query= BRENDA::P23721
         (362 letters)



>NCBI__GCF_000310185.1:WP_004299033.1
          Length = 365

 Score =  397 bits (1020), Expect = e-115
 Identities = 204/366 (55%), Positives = 256/366 (69%), Gaps = 5/366 (1%)

Query: 1   MAQIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDL 60
           M++++NFS+GPA+LP EVL+QA  E+ DW+G G  VME+SHRGKEF  +A +AE D R+L
Sbjct: 1   MSRVWNFSAGPAVLPEEVLRQAADEMLDWHGSGMGVMEMSHRGKEFTAIAAQAEADLREL 60

Query: 61  LNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFD 120
           L VP+ Y+VLF  GG   + A +P+N++GD+  ADYV  G W+  + KEA+KY   N+  
Sbjct: 61  LAVPAGYRVLFMQGGAIAENAIIPMNLMGDRRVADYVVTGSWSQKSQKEARKYAEVNIA- 119

Query: 121 AKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFG----ADVVVAADFS 176
           A     G   V  M EW+LS + AY+  C NETI G+     PD       +V V AD S
Sbjct: 120 ASSEAGGFTTVPAMAEWKLSADPAYVFTCTNETIGGLEYPFEPDLAQIGRGEVPVVADMS 179

Query: 177 STILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGS 236
           S ILSR IDVS+YG+I+ GAQKNIGPAGLTIVIVREDLLG+A   CP+  D+  + DNGS
Sbjct: 180 SHILSRVIDVSKYGLIFGGAQKNIGPAGLTIVIVREDLLGRAMPHCPTAFDFKTVADNGS 239

Query: 237 MFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKANRS 296
           M+NTPPT+  Y++GLVF+WLK  GGVA ++  N  KA+LLY  +D SDFY N +  A RS
Sbjct: 240 MYNTPPTYGIYIAGLVFQWLKRQGGVAAIEAQNVAKAKLLYDFLDASDFYENRIDPACRS 299

Query: 297 RMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVE 356
           RMNVPF L D AL+  FL E+ AAGL  LKGH+ VGGMRASIYNAMPL GV+AL DFM +
Sbjct: 300 RMNVPFFLKDEALNDAFLAEAKAAGLVQLKGHKSVGGMRASIYNAMPLAGVQALVDFMRD 359

Query: 357 FERRHG 362
           F  R G
Sbjct: 360 FAARRG 365


Lambda     K      H
   0.319    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 412
Number of extensions: 11
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 365
Length adjustment: 29
Effective length of query: 333
Effective length of database: 336
Effective search space:   111888
Effective search space used:   111888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_004299033.1 C665_RS02130 (3-phosphoserine/phosphohydroxythreonine transaminase)
to HMM TIGR01364 (serC: phosphoserine transaminase (EC 2.6.1.52))

Software error:

../bin/blast/fastacmd -i /tmp/list.26056.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26056.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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