Alignments for a candidate for cmutase in Thauera aminoaromatica S2

Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate WP_004299037.1 C665_RS02135 prephenate dehydratase

Query= SwissProt::P27603
         (365 letters)



>NCBI__GCF_000310185.1:WP_004299037.1
          Length = 355

 Score =  373 bits (958), Expect = e-108
 Identities = 186/362 (51%), Positives = 250/362 (69%), Gaps = 8/362 (2%)

Query: 4   ADQLKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWVLKH 63
           +D+L  LR  ID +DE IL  ++ERARCAQ V  +K          ++YRPEREA VL+ 
Sbjct: 2   SDELLKLRNEIDRIDEEILARLAERARCAQRVGEIKRG-------VMYYRPEREAQVLRR 54

Query: 64  IMELNKGPLDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVISKP 123
           + ELN GPL ++ +  +FRE+MS+CL LEQPLRVAYLGP GTFS++A+ KHFG +    P
Sbjct: 55  LAELNPGPLSSDAVKTIFREVMSACLGLEQPLRVAYLGPAGTFSESASRKHFGSAPNFLP 114

Query: 124 MAAIDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHLLVG 183
           MAAID+VFR V AG  ++GVVPVENSTEGAV  TLD  L + + +CGEV LRIH  L+  
Sbjct: 115 MAAIDDVFRAVEAGNADYGVVPVENSTEGAVGGTLDLLLANPLKVCGEVRLRIHQQLM-S 173

Query: 184 ETTKTDRITRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIAGDM 243
                    RIYSHAQSLAQC +WL+ + P++ R+ V+SNA+AA+    +  S AIAGD 
Sbjct: 174 RAEGIGAARRIYSHAQSLAQCHEWLNRNLPHLPRIPVASNAEAARMASEDPESCAIAGDA 233

Query: 244 AAQLYGLSKLAEKIEDRPVNSTRFLIIGSQEVPPTGDDKTSIIVSMRNKPGALHELLMPF 303
           AAQLYGL+ LA  IED P N+TRFL+I   +  P+G D+TS++ S  N+PGA+H LL P 
Sbjct: 234 AAQLYGLNILAPNIEDDPNNTTRFLVIADHDAGPSGKDRTSLVFSAPNRPGAIHSLLEPM 293

Query: 304 HSNGIDLTRIETRPSRSGKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGSYPKA 363
             +G+D+T++++RP+RSG W YVF+ D  GH +DP +   L ++   A  +K++GSYP A
Sbjct: 294 ARHGVDMTKLQSRPARSGLWEYVFYADINGHREDPEVAAALRELDERAAFVKIIGSYPVA 353

Query: 364 VL 365
            +
Sbjct: 354 AI 355


Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 346
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 355
Length adjustment: 29
Effective length of query: 336
Effective length of database: 326
Effective search space:   109536
Effective search space used:   109536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_004299037.1 C665_RS02135 (prephenate dehydratase)
to HMM TIGR01807 (pheA: chorismate mutase (EC 5.4.99.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.15833.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15833.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.