Alignments for a candidate for cysK in Thauera aminoaromatica S2

Align Cysteine synthase B; CSase B; O-acetylserine (thiol)-lyase B; OAS-TL B; O-acetylserine sulfhydrylase B; EC 2.5.1.47 (characterized)
to candidate WP_004299063.1 C665_RS02175 cysteine synthase CysM

Query= SwissProt::P16703
         (303 letters)



>NCBI__GCF_000310185.1:WP_004299063.1
          Length = 296

 Score =  376 bits (965), Expect = e-109
 Identities = 187/290 (64%), Positives = 223/290 (76%)

Query: 3   TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD 62
           TLE  +G TPLV+L+R+     + +  KLEGNNPAGSVKDR ALSM++ AE RG+IKPGD
Sbjct: 5   TLEDYVGRTPLVRLKRIDAGRNNVILAKLEGNNPAGSVKDRPALSMVMRAEARGQIKPGD 64

Query: 63  VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGA 122
            LIEATSGNTGIALAM AA++GYRM L+MP+N S ERR  MRA+GAEL+LV    GME A
Sbjct: 65  TLIEATSGNTGIALAMAAAIRGYRMILVMPENQSVERRQTMRAFGAELVLVPSSGGMEMA 124

Query: 123 RDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGV 182
           RD+A +M + G G +LDQF NPDNP AHY  TGPE+W+QTGGRITHFVSSMGTTGTI G 
Sbjct: 125 RDIAEKMRDEGRGIILDQFANPDNPVAHYEGTGPELWEQTGGRITHFVSSMGTTGTIMGT 184

Query: 183 SRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMR 242
           SRF++E++  + IVG +PEEGSSIPGIR+WP  YLP IF    VD    + Q DAE   R
Sbjct: 185 SRFLKERNPDICIVGCEPEEGSSIPGIRKWPEAYLPKIFERPRVDRFERVSQADAEEMTR 244

Query: 243 ELAVREGIFCGVSSGGAVAGALRVAKANPDAVVVAIICDRGDRYLSTGVF 292
            LA  EGIF G+SSGGA+  ALR+A    +AV+V+I+CDRGDRYLSTGVF
Sbjct: 245 RLAREEGIFAGISSGGAMHVALRIAAQVENAVIVSIVCDRGDRYLSTGVF 294


Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 338
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 296
Length adjustment: 27
Effective length of query: 276
Effective length of database: 269
Effective search space:    74244
Effective search space used:    74244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate WP_004299063.1 C665_RS02175 (cysteine synthase CysM)
to HMM TIGR01138 (cysM: cysteine synthase B (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.15649.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15649.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.