Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_004303478.1 C665_RS06545 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>NCBI__GCF_000310185.1:WP_004303478.1
Length = 1076
Score = 1475 bits (3818), Expect = 0.0
Identities = 759/1079 (70%), Positives = 879/1079 (81%), Gaps = 12/1079 (1%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MPKRTDIK+ILI+GAGPI+IGQACEFDYSGAQACKALREEGY+VILVNSNPATIMTDPE
Sbjct: 1 MPKRTDIKTILIIGAGPIIIGQACEFDYSGAQACKALREEGYKVILVNSNPATIMTDPET 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
AD TYIEPI W+VV +II+KERPDA+LPTMGGQTALNCAL+L R GVL ++GV +IGA+
Sbjct: 61 ADVTYIEPITWQVVERIIDKERPDAILPTMGGQTALNCALDLGRHGVLAKYGVELIGASE 120
Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
+AIDKAEDR +F AM +IGL +ARSGIAH+MEEAL V +GFP IIRPSFT+GG+GGG
Sbjct: 121 EAIDKAEDRLKFKDAMTRIGLGSARSGIAHSMEEALQVQGGIGFPVIIRPSFTLGGTGGG 180
Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
IAYN EEF+EIC RGL+ SPT ELLI+ESL+GWKEYEMEVVRD+ DNCIIVCSIEN D M
Sbjct: 181 IAYNMEEFQEICKRGLEASPTNELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPM 240
Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
G+HTGDSITVAPAQTLTDKEYQIMRNAS+AVLREIGV+TGGSNVQFA+NP++GR+IVIEM
Sbjct: 241 GVHTGDSITVAPAQTLTDKEYQIMRNASIAVLREIGVDTGGSNVQFAINPQDGRMIVIEM 300
Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360
NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDEL NDITGG TPASFEPSIDYVVTKIP
Sbjct: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELRNDITGGATPASFEPSIDYVVTKIP 360
Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA 420
RF FEKF ANDRLTTQMKSVGEVMA+GR+ QES QKALRGLEVG G D +V D +
Sbjct: 361 RFAFEKFPQANDRLTTQMKSVGEVMAMGRSFQESFQKALRGLEVGVYGLD-EVEADRED- 418
Query: 421 LTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG 480
+ E+ GA RIWY+ AFR G+S++ VFNL+ ID WFL QIE++V E+ +A
Sbjct: 419 ---LEHEIASPGAQRIWYVGQAFREGMSLEQVFNLSKIDPWFLAQIEDIVLSEKALAGRS 475
Query: 481 ITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDT 540
+ L A LR+LK+KGF+D RLAKL E +R R + PV+KRVDTCAAEFAT T
Sbjct: 476 LKALQAAELRELKKKGFSDRRLAKLLNADETAVRLHRHTLGVRPVFKRVDTCAAEFATST 535
Query: 541 AYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVN 600
AY+YS+YE+ECEA P T+R+KIMVLGGGPNRIGQGIEFDYCCVHA+LALREDGYETIMVN
Sbjct: 536 AYLYSSYEDECEAMP-TERKKIMVLGGGPNRIGQGIEFDYCCVHAALALREDGYETIMVN 594
Query: 601 CNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVP 660
CNPETVSTDYDTSDRLYFEP+TLED+LEIV IEKP GVIVQ+GGQTPLK A+ALEA GVP
Sbjct: 595 CNPETVSTDYDTSDRLYFEPITLEDLLEIVHIEKPVGVIVQFGGQTPLKRAQALEANGVP 654
Query: 661 VIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVL 720
+IGTSPD ID AEDRERFQ + L L+QP N T AV A EIGYPLVVRPSYVL
Sbjct: 655 IIGTSPDMIDAAEDRERFQQLLVELGLRQPPNRTARTPAEAVRLAAEIGYPLVVRPSYVL 714
Query: 721 GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIME 780
GGRAMEIV+++ DL RY + AV VSN++PVLLD FL+DA EVDVDA+ DG+ V+IGGIME
Sbjct: 715 GGRAMEIVHEQKDLERYMREAVKVSNESPVLLDRFLNDATEVDVDALSDGKQVMIGGIME 774
Query: 781 HIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVK----NNE 836
HIEQAGVHSGDSACSLP YTLS +QD +R+Q + +A L+V GLMNVQFA++ N
Sbjct: 775 HIEQAGVHSGDSACSLPPYTLSARLQDELRRQTEAMARALKVVGLMNVQFAIQGEGDNAV 834
Query: 837 VYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLP 896
VY++EVNPRA+RTVPFVSKA +PLAK+AAR MAG+SLAEQGV+ E++PPYYSVKE V P
Sbjct: 835 VYVLEVNPRASRTVPFVSKACSLPLAKIAARCMAGQSLAEQGVSGEIVPPYYSVKEAVFP 894
Query: 897 FNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKER 956
F KFPGVD +LGPEM+STGEVMGVGR+FAEAF K+Q+G+ + G +SVR DK
Sbjct: 895 FVKFPGVDTILGPEMKSTGEVMGVGRSFAEAFVKSQMGAGVRLPTAGTVFISVRPTDKPV 954
Query: 957 VVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINT 1016
+++A +L + GF L AT GTA + AGI +VNKV+EGRPHI D IKN E +INT
Sbjct: 955 AIEVARELHEMGFALVATRGTAAAIEAAGIPVGVVNKVNEGRPHIVDIIKNEEIVLVINT 1014
Query: 1017 TSGRR-AIEDSRVIRRSALQYKVHYDTTLNGGFATAMAL-NADATEKVISVQEMHAQIK 1073
+R AI DSR IR SAL KV TT+ G A M + + +V SVQ +HA++K
Sbjct: 1015 VDEKRQAIADSRSIRTSALAAKVSIFTTIEGARAACMGMRHLSNGLEVYSVQGLHAELK 1073
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3036
Number of extensions: 118
Number of successful extensions: 16
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1073
Length of database: 1076
Length adjustment: 45
Effective length of query: 1028
Effective length of database: 1031
Effective search space: 1059868
Effective search space used: 1059868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_004303478.1 C665_RS06545 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.8671.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8671.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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