Alignments for a candidate for cysK in Thauera aminoaromatica S2

Align Cysteine synthase; CSase; O-acetylserine (thiol)-lyase; OAS-TL; O-acetylserine sulfhydrylase; EC 2.5.1.47 (characterized)
to candidate WP_004313067.1 C665_RS12845 cysteine synthase A

Query= SwissProt::Q59966
         (329 letters)



>NCBI__GCF_000310185.1:WP_004313067.1
          Length = 325

 Score =  495 bits (1275), Expect = e-145
 Identities = 242/323 (74%), Positives = 287/323 (88%)

Query: 6   TFFADNSQTIGKTPLVRLNRIVKGAPATVLAKIEGRNPAYSVKCRIGAAMIWDAEQRGLL 65
           T++ DN+++IG+TPLVRLNR++ GA ATVLAKIEGRNPAYSVKCRIGAAM+ DA   G L
Sbjct: 3   TWYPDNAESIGRTPLVRLNRVLDGAQATVLAKIEGRNPAYSVKCRIGAAMVKDAIAHGRL 62

Query: 66  GPGKELIEPTSGNTGIALAFVAAARGIPLTLTMPETMSLERRKLLAAYGAKLVLTEGVKG 125
           GPG+E++EPTSGNTGIALAFV AARGIPLTLTMPETMS+ERRKLL AYGA+LVLTEG KG
Sbjct: 63  GPGQEIVEPTSGNTGIALAFVCAARGIPLTLTMPETMSVERRKLLVAYGARLVLTEGPKG 122

Query: 126 MTGAVRRAEDIAASDPDRYVLLQQFRNPANPAIHEQTTGPEIWEDTGGAIDILVSGVGTG 185
           M GA+ +A++I  SDP RYVLLQQF NPANPAIHE TTGPEIW DT G IDILVSGVGTG
Sbjct: 123 MNGAIAKAKEIVDSDPGRYVLLQQFENPANPAIHETTTGPEIWNDTDGGIDILVSGVGTG 182

Query: 186 GTITGVSRYIKQTQGKPILSVAVEPEASPVISQQRSGLPLKPGPHKIQGIGAGFIPENLD 245
           GTITG+SRYIK+ +GK I S+AVEP ASPVISQ  +G PL P PHKIQG+GAGF+P+ LD
Sbjct: 183 GTITGISRYIKRVRGKDIRSIAVEPAASPVISQTLAGQPLTPAPHKIQGLGAGFVPKVLD 242

Query: 246 LSLVDQVERVSNEEAIAYARRLAQEEGLISGISCGAAVAAAVRLAQQSEHAGKTIVVVLP 305
           LSL+D VE+VSNE+A+ YARRLA+EEG+++GISCGAAVAAA R+A+Q E+AGKTIVV+LP
Sbjct: 243 LSLIDAVEQVSNEDAVLYARRLAREEGILAGISCGAAVAAAARVAKQPENAGKTIVVILP 302

Query: 306 DSGERYLSTALFDGIFNEQGLAV 328
           DSGERYLS+ LF+G+F+E+G+A+
Sbjct: 303 DSGERYLSSILFEGLFDEKGMAI 325


Lambda     K      H
   0.316    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 433
Number of extensions: 13
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 325
Length adjustment: 28
Effective length of query: 301
Effective length of database: 297
Effective search space:    89397
Effective search space used:    89397
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate WP_004313067.1 C665_RS12845 (cysteine synthase A)
to HMM TIGR01139 (cysK: cysteine synthase A (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.17878.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17878.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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