Alignments for a candidate for glnA in Thauera aminoaromatica S2

Align Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 (characterized)
to candidate WP_004314445.1 C665_RS13385 type I glutamate--ammonia ligase

Query= SwissProt::Q3V5W6
         (468 letters)



>NCBI__GCF_000310185.1:WP_004314445.1
          Length = 469

 Score =  658 bits (1697), Expect = 0.0
 Identities = 315/463 (68%), Positives = 376/463 (81%), Gaps = 1/463 (0%)

Query: 5   VQLIKDHDVKWIDLRFTDTKGTQHHVTMPARDALEDDFFEVGKMFDGSSIAGWKGIEASD 64
           +++I++++V+++DLRFTD +G +HHV +P   A E++ FE G  FDGSS+AGWKGI+ASD
Sbjct: 7   MKMIQENEVRFVDLRFTDIRGKEHHVGLPV-SAFEEEHFEHGHPFDGSSLAGWKGIQASD 65

Query: 65  MILLPDDDTAVLDPFTEDATLILVCDIIEPSTMQGYDRDPRAIAHRAEEYLKTTGIGDTV 124
           MIL+P+  TA +DPF ++ TL++ CD+IEPS  +GYDRDPR+IA RAE YLK+TGIGDT 
Sbjct: 66  MILMPEPSTAYIDPFFDETTLVITCDVIEPSDGKGYDRDPRSIAKRAEAYLKSTGIGDTA 125

Query: 125 FAGPEPEFFIFDEVKFKSDISGSMFKIYSEQGSWMSDQDIEGGNKGHRPGVKGGYFPVPP 184
           F GPEPEFFIFD V++  D+SG   KI SE+ +W +    EGGN GHRP VKGGYFPVPP
Sbjct: 126 FFGPEPEFFIFDSVEWSVDMSGVYSKIISEEAAWSTADKFEGGNTGHRPRVKGGYFPVPP 185

Query: 185 FDHDHEIRTAMCNALEEMGQTVEVHHHEVATAGQNEIGVKFNTLVKKADEVQTLKYVVHN 244
            D  +++R AM  ALE  G  VEVHHHEVA AGQ EIG KF+TL ++AD  Q LKY+VHN
Sbjct: 186 VDSLNDVRAAMVLALEACGVPVEVHHHEVANAGQCEIGTKFSTLTQRADWTQVLKYIVHN 245

Query: 245 VADAYGRTATFMPKPLYGDNGSGMHVHMSIAKDGKNTFAGEGYAGLSETALYFIGGIIKH 304
           VA  YG+TATFMPKP+ GDNGSGMHVH SI KDGKN FAG GYAGLSETALY+IGGIIKH
Sbjct: 246 VAHQYGKTATFMPKPIVGDNGSGMHVHQSIWKDGKNLFAGNGYAGLSETALYYIGGIIKH 305

Query: 305 GKALNGFTNPATNSYKRLVPGFEAPVMLAYSARNRSASIRIPYVNSPRGRRIEARFPDPA 364
            +ALN  TNP TNSYKRLVP +EAP  LAYSARNRSASIRIPYV +P+GRRIE+RFPDP 
Sbjct: 306 ARALNAITNPGTNSYKRLVPHYEAPTKLAYSARNRSASIRIPYVANPKGRRIESRFPDPL 365

Query: 365 ANPYLAFAALLMAGLDGIQNKIHPGDAADKNLYDLPPEEAKEIPQVCGSLKEALEELDKG 424
           ANPY+ FAAL+MAGLDGIQNKIHPGD ADKNLYDLPPEE   IP VC SL++ALE LDK 
Sbjct: 366 ANPYMCFAALMMAGLDGIQNKIHPGDPADKNLYDLPPEEDALIPTVCTSLEQALEYLDKD 425

Query: 425 RAFLTKGGVFSDDFIDAYIALKSEEEIKVRTFVHPLEYELYYS 467
           R FLT+GGVFS+DFIDAYIALK EE  ++R   HP+E+++YYS
Sbjct: 426 REFLTRGGVFSNDFIDAYIALKMEEVDRMRITTHPVEFDMYYS 468


Lambda     K      H
   0.318    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 796
Number of extensions: 28
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 469
Length adjustment: 33
Effective length of query: 435
Effective length of database: 436
Effective search space:   189660
Effective search space used:   189660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_004314445.1 C665_RS13385 (type I glutamate--ammonia ligase)
to HMM TIGR00653 (glnA: glutamine synthetase, type I (EC 6.3.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.2080.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2080.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.