Alignments for a candidate for dapA in Thauera aminoaromatica S2

Align 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) (characterized)
to candidate WP_004314943.1 C665_RS13710 4-hydroxy-tetrahydrodipicolinate synthase

Query= BRENDA::Q9I4W3
         (292 letters)



>NCBI__GCF_000310185.1:WP_004314943.1
          Length = 292

 Score =  338 bits (867), Expect = 8e-98
 Identities = 174/292 (59%), Positives = 213/292 (72%)

Query: 1   MIAGSMVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVI 60
           MI GS+VA+VTP    G LD+  L  L+D+H+ EGT+ IV VGTTGES T+ V+EH ++I
Sbjct: 1   MITGSLVAIVTPMHDDGSLDFPRLRSLIDWHIAEGTDGIVIVGTTGESPTVTVDEHCELI 60

Query: 61  RRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFR 120
           R  V+   GR+PVIAGTGANST EAV L   A   GA+A L V PYYN+PTQEG+Y+HFR
Sbjct: 61  RVAVEHCAGRVPVIAGTGANSTAEAVELARFAAQAGANAHLSVVPYYNRPTQEGLYRHFR 120

Query: 121 HIAEAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIERVGKD 180
            IAEAV +P ILYNVPGRT  D+  ETV RL++VPNI+G+K+ATG+L RA ++IER   D
Sbjct: 121 TIAEAVELPLILYNVPGRTVADLANETVMRLAEVPNIVGLKDATGNLDRACDLIERAPAD 180

Query: 181 FLVYSGDDATAVELMLLGGKGNISVTANVAPRAMSDLCAAAMRGDAAAARAINDRLMPLH 240
           F +YSGDD T+   ++LGG G ISVTANVAPRAM  LCAAA  GD    R  N  L  LH
Sbjct: 181 FGLYSGDDMTSAAFLMLGGHGVISVTANVAPRAMHALCAAAAAGDMRTLRETNAGLTGLH 240

Query: 241 KALFIESNPIPVKWALHEMGLIPEGIRLPLTWLSPRCHEPLRQAMRQTGVLA 292
           + LF E+NPIPVKWA+  MGLI +G+RLPLT LS   HE +R AMR+ G+ A
Sbjct: 241 RDLFCEANPIPVKWAVARMGLIGDGLRLPLTPLSAAHHERVRAAMRKAGIQA 292


Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 284
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 292
Length adjustment: 26
Effective length of query: 266
Effective length of database: 266
Effective search space:    70756
Effective search space used:    70756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_004314943.1 C665_RS13710 (4-hydroxy-tetrahydrodipicolinate synthase)
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.14861.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14861.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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