Alignments for a candidate for asp-kinase in Thauera aminoaromatica S2

Align Aspartate kinase Ask_LysC; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate WP_004316701.1 C665_RS14355 aspartate kinase

Query= SwissProt::A4VJB4
         (412 letters)



>NCBI__GCF_000310185.1:WP_004316701.1
          Length = 410

 Score =  530 bits (1364), Expect = e-155
 Identities = 277/409 (67%), Positives = 330/409 (80%), Gaps = 2/409 (0%)

Query: 1   MALIVQKFGGTSVGTVERIEQVAEKVKKFRDGGDDIVVVVSAMSGETNRLIDLAKQISEQ 60
           MALIVQK+GGTSVGT ER+  VA +V  FR  G  +VVVVSAMSGETNRLI LA+ ++  
Sbjct: 1   MALIVQKYGGTSVGTPERMRSVARRVANFRAQGHRVVVVVSAMSGETNRLIALARAVAPS 60

Query: 61  PVPRELDVMVSTGEQVTIALLAMALIKRGVPAVSYTGNQVRILTDSAHTKARILQIDAQR 120
           P  RELDV+VSTGEQV+I LL MAL   GVPA SYTG QVRILTDS HT+ARIL IDA  
Sbjct: 61  PRTRELDVVVSTGEQVSIGLLCMALDDLGVPARSYTGAQVRILTDSTHTRARILDIDAAP 120

Query: 121 IQRDIKAGRVVVVAGFQGVDEKGNITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYT 180
           I++D+ AG VVVVAGFQGVD  GNITTLGRGGSDTT VALAAAL+ADECQIYTDVDGVYT
Sbjct: 121 IRKDLDAGGVVVVAGFQGVDAHGNITTLGRGGSDTTAVALAAALEADECQIYTDVDGVYT 180

Query: 181 TDPRVVAKAQRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYSVPLRVLHSFQEGP--GT 238
            DPR+V +A++LD + FEEMLE+ASLGSKVLQIRAVEFA KY V LRVL SF+E P  GT
Sbjct: 181 ADPRIVPEARKLDAVRFEEMLELASLGSKVLQIRAVEFAAKYKVKLRVLSSFEEDPGEGT 240

Query: 239 LITLDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISAANVEVDMIVQNV 298
            IT++E  +ME+P+ISGIAF RDEAKLT+ GVPD PG+A++ILGPI+ A+++VDMI+QN 
Sbjct: 241 FITVEESSNMERPVISGIAFVRDEAKLTLTGVPDRPGIAYQILGPIADADIDVDMIIQNA 300

Query: 299 AHDNTTDFTFTVHRNDYNNALQVLQGIAAEMGAREAIGDTNIAKVSIVGVGMRSHAGVAS 358
             D +TD +FTV R D   A++VL+G+ A +GAR    D  + KVS+VGVGMRSH GVA+
Sbjct: 301 PRDGSTDLSFTVARADLARAVKVLEGVQAHVGARSIESDDTMCKVSVVGVGMRSHPGVAA 360

Query: 359 RMFEALAKENINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELDAPA 407
           +MF  LA+E INIQMI+TSEI++SV I+EK+LE AVRALH A+ LD  A
Sbjct: 361 KMFRTLAEEGINIQMITTSEIRISVAIDEKHLERAVRALHKAYGLDVAA 409


Lambda     K      H
   0.317    0.133    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 525
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 410
Length adjustment: 31
Effective length of query: 381
Effective length of database: 379
Effective search space:   144399
Effective search space used:   144399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_004316701.1 C665_RS14355 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.17079.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17079.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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