Alignments for a candidate for cmutase in Geobacter metallireducens GS-15

Align Chorismate mutase; CM; Monofunctional chorismate mutase AroQ(f); EC 5.4.99.5 (characterized)
to candidate WP_004511889.1 GMET_RS09875 chorismate mutase

Query= SwissProt::Q57696
         (99 letters)



>NCBI__GCF_000012925.1:WP_004511889.1
          Length = 98

 Score = 60.8 bits (146), Expect = 4e-15
 Identities = 30/94 (31%), Positives = 62/94 (65%), Gaps = 3/94 (3%)

Query: 7  EIRKKIDEIDNKILKLIAERNSLAKDVAEIKNQLGIPINDPEREKYIYDRIRKLCKEHNV 66
          E+R++ID +D+++L++   R SLA ++  IK + G+P+ DP+REK I++R+ K      +
Sbjct: 5  ELRQEIDRMDSELLRIFNRRASLALEIGLIKKERGLPVYDPKREKLIFERM-KADNPGPL 63

Query: 67 DENIGIKIFQILIEHNKALQK--QYLEETQNKNK 98
          D+   +++F+ +I+ ++ L++   + EET  K +
Sbjct: 64 DDGAIVRLFERVIDESRRLERIMTHPEETTGKEE 97


Lambda     K      H
   0.315    0.136    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 99
Length of database: 98
Length adjustment: 10
Effective length of query: 89
Effective length of database: 88
Effective search space:     7832
Effective search space used:     7832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.6 bits)
S2: 39 (19.6 bits)

Align candidate WP_004511889.1 GMET_RS09875 (chorismate mutase)
to HMM PF01817 (CM_2)

Software error:

../bin/blast/fastacmd -i /tmp/list.20515.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20515.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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