Alignments for a candidate for cmutase in Geobacter metallireducens GS-15

Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate WP_004513008.1 GMET_RS04315 prephenate dehydratase

Query= SwissProt::P27603
         (365 letters)



>NCBI__GCF_000012925.1:WP_004513008.1
          Length = 355

 Score =  305 bits (782), Expect = 9e-88
 Identities = 156/357 (43%), Positives = 233/357 (65%), Gaps = 6/357 (1%)

Query: 7   LKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWVLKHIME 66
           L+ LR  ID++D++ILDL++ R+R A EV +VK       E   F+ P RE  + + +  
Sbjct: 4   LQELRRDIDAIDDQILDLLNSRSRLAIEVGKVKAG-----ENRDFHVPSREREIYERLAA 58

Query: 67  LNKGPLDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVISKPMAA 126
            N GP  NE +  +FREI+S+ LALE P++VA+LGP+ TF+  A+L+HFG S    P  +
Sbjct: 59  GNSGPFPNEAVRSVFREIISASLALESPMKVAFLGPKATFTHLASLQHFGLSAELVPQKS 118

Query: 127 IDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHLLVGETT 186
           I  VF EV  G   +GVVPVENSTEG V+HTLD F+E D+ I  E+ L + H LL   T 
Sbjct: 119 IPAVFEEVSKGRSLYGVVPVENSTEGMVSHTLDMFMESDLKINAEILLEVSHDLL-SRTG 177

Query: 187 KTDRITRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIAGDMAAQ 246
           + + + ++YSH Q++AQCR WLD +   V  V V+S A AA+ V  ++ +AAIA + AA 
Sbjct: 178 RLEDVKKVYSHPQAIAQCRNWLDENLSGVPVVDVASTALAAQIVGEDYTAAAIASEFAAA 237

Query: 247 LYGLSKLAEKIEDRPVNSTRFLIIGSQEVPPTGDDKTSIIVSMRNKPGALHELLMPFHSN 306
           LY L  +  +IED+  N TRFL++G +     GDDKTS++ S++++PG LH +L PF   
Sbjct: 238 LYDLKVVRHRIEDQVNNFTRFLVVGRKMADRCGDDKTSLMFSVKDEPGILHRMLEPFAKR 297

Query: 307 GIDLTRIETRPSRSGKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGSYPKA 363
           G++L++IE+RP +   W Y+FF+D  GH  DP++ + ++++ +    +K+LGSYP+A
Sbjct: 298 GVNLSKIESRPLKKKAWEYIFFLDLAGHISDPVVSDAVQELKNYCQFVKILGSYPRA 354


Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 312
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 355
Length adjustment: 29
Effective length of query: 336
Effective length of database: 326
Effective search space:   109536
Effective search space used:   109536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_004513008.1 GMET_RS04315 (prephenate dehydratase)
to HMM TIGR01807 (pheA: chorismate mutase (EC 5.4.99.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.22776.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22776.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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