Alignments for a candidate for cysE in Geobacter metallireducens GS-15

Align Serine acetyltransferase; SAT; EC 2.3.1.30 (characterized)
to candidate WP_004513016.1 GMET_RS04360 serine O-acetyltransferase

Query= SwissProt::Q06750
         (217 letters)



>NCBI__GCF_000012925.1:WP_004513016.1
          Length = 225

 Score =  241 bits (615), Expect = 8e-69
 Identities = 121/208 (58%), Positives = 150/208 (72%), Gaps = 1/208 (0%)

Query: 3   FRMLKEDIDTVFDQDPAARSYFEVILTYSGLHAIWAHRIAHALYKRKFYFLARLISQVSR 62
           F  L EDI +V ++DPAARS  EV   Y GLHAIW HR AH  + R+F+FL R +S + R
Sbjct: 2   FARLHEDIQSVKERDPAARSSVEVFFCYPGLHAIWFHRFAHWFWMREFFFLGRFLSHIGR 61

Query: 63  FFTGIEIHPGATIGRRFFIDHGMGVVIGETCEIGNNVTVFQGVTLGGTGKEKGKRHPTIK 122
           FFTGIEIHPGATIGRR FIDHGMGVVIGET EIG++VT++ GVTLGG   EK KRHPT+ 
Sbjct: 62  FFTGIEIHPGATIGRRLFIDHGMGVVIGETAEIGDDVTIYHGVTLGGVSLEKKKRHPTVD 121

Query: 123 DDALIATGAKVLGSITVGEGSKIGAGSVVLHDVPDFSTVVGIPGRVVVQNGKKVRR-DLN 181
           ++A+I +GAKVLG  TVG G+KIG+ SVV+ +VP  +TVVGIPGRVV+   +  ++ D  
Sbjct: 122 NNAVIGSGAKVLGPFTVGVGAKIGSNSVVVKEVPANATVVGIPGRVVMAADEPAKKADFE 181

Query: 182 HQDLPDPVADRFKSLEQQILELKAELED 209
           H  LPDP A     L  Q+ EL+ +  D
Sbjct: 182 HGKLPDPEAKAISCLFDQLRELERKYAD 209


Lambda     K      H
   0.323    0.141    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 240
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 225
Length adjustment: 22
Effective length of query: 195
Effective length of database: 203
Effective search space:    39585
Effective search space used:    39585
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate WP_004513016.1 GMET_RS04360 (serine O-acetyltransferase)
to HMM TIGR01172 (cysE: serine O-acetyltransferase (EC 2.3.1.30))

Software error:

../bin/blast/fastacmd -i /tmp/list.27930.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27930.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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