Align Carbamoyl-phosphate synthase pyrimidine-specific large chain; Carbamoyl-phosphate synthetase ammonia chain; EC 6.3.5.5 (characterized)
to candidate WP_005350103.1 EUBHAL_RS11955 carbamoyl-phosphate synthase large subunit
Query= SwissProt::P25994
(1071 letters)
>NCBI__GCF_000173975.1:WP_005350103.1
Length = 1077
Score = 1214 bits (3140), Expect = 0.0
Identities = 611/1052 (58%), Positives = 788/1052 (74%), Gaps = 2/1052 (0%)
Query: 1 MPKRVDINKILVIGSGPIIIGQAAEFDYAGTQACLALKEEGYEVILVNSNPATIMTDTEM 60
MPK I K+LVIGSGPI+IGQAAEFDYAGTQAC +LKEEG V+LVNSNPATIMTD ++
Sbjct: 1 MPKNTSIKKVLVIGSGPIVIGQAAEFDYAGTQACRSLKEEGIHVVLVNSNPATIMTDKDI 60
Query: 61 ADRVYIEPLTPEFLTRIIRKERPDAILPTLGGQTGLNLAVELSERGVLAECGVEVLGTKL 120
AD VYIEPLTPE + ++I K PD++LPTLGGQ LN+A+EL E G L E V+++GT
Sbjct: 61 ADEVYIEPLTPEVIKKLILKVSPDSLLPTLGGQAALNIAMELDECGFLKEHKVKLIGTTG 120
Query: 121 SAIQQAEDRDLFRTLMNELNEPVPESEIIHSLEEAEKFVSQIGFPVIVRPAYTLGGTGGG 180
I++AEDR+ F+ M ++ EP+ S+I+ ++E+ ++ +IG+PV++RPAYTLGG+GGG
Sbjct: 121 KTIRKAEDREEFKETMEKIGEPIAPSQIVTNVEDGLEYAQKIGYPVVLRPAYTLGGSGGG 180
Query: 181 ICSNETELKEIVENGLKLSPVHQCLLEKSIAGYKEIEYEVMRDSQDHAIVVCNMENIDPV 240
I NE E EI++NGL+LS V Q L+EKSIAG+KEIEYEVMRD I VCNMEN+DPV
Sbjct: 181 IADNEEEFVEIIQNGLRLSRVGQVLVEKSIAGWKEIEYEVMRDGNGTCITVCNMENLDPV 240
Query: 241 GIHTGDSIVVAPSQTLSDREYQLLRNVSLKLIRALGIEGGCNVQLALDPDSFQYYIIEVN 300
G+HTGDSIVVAPSQTL D+EYQ+LRN +L +I LG+EGGCNVQ AL+PD+F Y +IEVN
Sbjct: 241 GVHTGDSIVVAPSQTLGDKEYQMLRNSALNIIDELGVEGGCNVQFALNPDTFDYCVIEVN 300
Query: 301 PRVSRSSALASKATGYPIAKLAAKIAVGLSLDEMMNPVTGKTYAAFEPALDYVVSKIPRW 360
PRVSRSSALASKATGYPIAK+ AKIA+G LDE+ N VTGKT+A+FEPALDY V K+PR
Sbjct: 301 PRVSRSSALASKATGYPIAKVTAKIALGYHLDEIKNAVTGKTFASFEPALDYCVVKVPRL 360
Query: 361 PFDKFESANRKLGTQMKATGEVMAIGRTLEESLLKAVRSLEADVYHLELKDAADISDELL 420
PFDKF SA+R L TQMKATGEVM+I E L+KA+RSLE V L D +SD+ L
Sbjct: 361 PFDKFISASRHLTTQMKATGEVMSICTNFEGGLMKALRSLEQHVDSLMHGDFDKLSDKEL 420
Query: 421 EKRIKKAGDERLFYLAEAYRRGYTVEDLHEFSAIDVFFLHKLFGIVQFEKELK-ANAGDT 479
E+ + D R++ +AEA RR + +H+ + ID++F+ KL IV+ E +LK A D
Sbjct: 421 EEHLHIVDDLRIYCIAEALRRKVNPQKIHDITKIDLWFIDKLNNIVEMEAKLKNAEELDR 480
Query: 480 DVLRRAKELGFSDQYISREWKMKESELYSLRKQAGIAPVFKMVDTCAAEFESETPYFYST 539
D+L +AKE+ F D+ I E + +LR+Q I P +K+VDTCAAEF +ETPY+YS
Sbjct: 481 DLLLKAKEMEFPDKVIGELIGQSEEYVKNLRRQMDIVPAYKVVDTCAAEFAAETPYYYSC 540
Query: 540 YEEENESVVT-DKKSVMVLGSGPIRIGQGVEFDYATVHSVWAIKQAGYEAIIVNNNPETV 598
+ NE T DKK +MVLGSGPIRIGQG+EFDY +VHSVWA K+ GYE IIVNNNPETV
Sbjct: 541 FGSFNEVEETSDKKKIMVLGSGPIRIGQGIEFDYCSVHSVWAFKEMGYETIIVNNNPETV 600
Query: 599 STDFSISDKLYFEPLTIEDVMHIIDLEQPMGVVVQFGGQTAINLADELSARGVKILGTSL 658
STDF I+DKLYFEPLT EDV HI++LE+P G VVQFGGQTAI L ++L+ GV ILGTS
Sbjct: 601 STDFDIADKLYFEPLTEEDVEHIVELEKPDGAVVQFGGQTAIKLTEKLNKIGVPILGTSA 660
Query: 659 EDLDRAEDRDKFEQALGELGVPQPLGKTATSVNQAVSIASDIGYPVLVRPSYVLGGRAME 718
E++D AEDR+ F++ L + +P+P G T + +A+ A++IGYPVL+RPSYVLGG+ M+
Sbjct: 661 ENVDAAEDRELFDEILEQCCIPRPKGGTVFTKEEAIKTANEIGYPVLIRPSYVLGGQGMQ 720
Query: 719 IVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVSDGETVVIPGIMEHIERAGV 778
I +E++ +M + +HP+LID+YL G E+EVDAV DGE +VIPGIM+H+ERAG+
Sbjct: 721 IAISDEDISEFMDVIQRYAQEHPILIDKYLMGVEVEVDAVCDGEEIVIPGIMQHVERAGI 780
Query: 779 HSGDSIAVYPPQSLTEDIKKKIEQYTIALAKGLNIVGLLNIQFVLSQGEVYVLEVNPRSS 838
HSGDSI+VYP + L+ IKK I YT LAK L+++GL+NIQF++ Q EVYV+EVNPRSS
Sbjct: 781 HSGDSISVYPARDLSPKIKKVIGHYTKLLAKALHVIGLINIQFIVYQDEVYVIEVNPRSS 840
Query: 839 RTVPFLSKITGIPMANLATKIILGQKLAAFGYTEGLQPEQQGVFVKAPVFSFAKLRRVDI 898
RTVP++SK+TGIP+ +LATK++ G KL GY GLQPE +K PVFSF K+R DI
Sbjct: 841 RTVPYISKVTGIPIVDLATKVMTGMKLKDLGYEPGLQPESPYWAIKMPVFSFEKIRGADI 900
Query: 899 TLGPEMKSTGEVMGKDSTLEKALYKALIASGIQIPNYGSVLLTVADKDKEEGLAIAKRFH 958
+LGPEMKSTGE +G E+AL+KA + SG+ +P + +++TV D DK + + + KRF
Sbjct: 901 SLGPEMKSTGECLGISKNFEEALFKAFLGSGVDLPKHKKMIMTVKDSDKLDAVEVGKRFT 960
Query: 959 AIGYNILATEGTAGYLKEASIPAKVVGKIGQDGPNLLDVIRNGEAQFVINTLTKGKQPAR 1018
A+GY I AT T L+E+ +PAK V KI + PNLLD+I + +I+T ++G + ++
Sbjct: 961 ALGYEIYATRNTCKTLQESGVPAKRVNKIEESHPNLLDLILGHQIDLIIDTPSQGIERSK 1020
Query: 1019 DGFRIRRESVENGVACLTSLDTAEAILRVLES 1050
DGF IRR +VE GV CLTSLDTA A+L LES
Sbjct: 1021 DGFVIRRHAVETGVNCLTSLDTANALLTSLES 1052
Lambda K H
0.316 0.135 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3003
Number of extensions: 132
Number of successful extensions: 13
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1071
Length of database: 1077
Length adjustment: 45
Effective length of query: 1026
Effective length of database: 1032
Effective search space: 1058832
Effective search space used: 1058832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Align candidate WP_005350103.1 EUBHAL_RS11955 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.2782.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2782.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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